Back to structures

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00606

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00606

Identity

Kingdom:
phage

Quality

93.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-117
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 48.0 5.25e-01 87.5% 89.9%
2ahoB03 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.62 46.0 5.02e-01 76.8% 98.9%
2rkvA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.62 47.0 3.83e-01 80.4% 90.2%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.62 46.0 3.68e-01 100.0% 40.6%
2ijrA01 3.30.70.1270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains 0.62 47.0 5.02e-01 100.0% 95.9%
2rhqB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.61 43.0 4.88e-01 73.2% 100.0%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.60 48.0 5.03e-01 100.0% 96.1%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 43.0 3.60e-01 100.0% 42.7%
1jnrB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 35.0 4.27e-01 81.2% 100.0%
3kkfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 4.66e-01 83.0% 88.6%
1s6lA02 3.15.10.60 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase 0.58 32.0 3.08e-01 100.0% 44.2%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 51.0 4.88e-01 100.0% 94.0%
4at7B02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 43.0 3.65e-01 82.1% 73.8%
2dr1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 39.0 3.69e-01 73.2% 72.6%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 22.0 3.23e-01 93.8% 90.5%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.55 40.0 3.92e-01 77.7% 100.0%
4xchA00 3.30.1360.80 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) 0.54 49.0 4.46e-01 100.0% 91.3%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 48.0 3.83e-01 100.0% 49.8%
6tznA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 41.0 4.19e-01 86.6% 92.6%
2leqA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 3.37e-01 73.2% 95.2%
1txoB00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 45.0 3.56e-01 100.0% 60.6%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4974741 304.125.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins 0.70 51.0 5.72e-01 97.3% 100.0%
3599904 304.19.1.0 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain 0.65 50.0 5.26e-01 82.1% 92.0%
4995927 3715.1.1.0 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.65 48.0 5.30e-01 93.8% 97.8%
1734768 4187.1.1.1 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.64 34.0 4.32e-01 100.0% 96.6%
3583421 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.63 49.0 5.22e-01 83.0% 95.8%
4027800 304.57.1.0 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.63 48.0 5.11e-01 81.2% 94.7%
3698765 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.63 51.0 5.24e-01 88.4% 93.3%
4154765 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.62 46.0 4.95e-01 77.7% 92.6%
5052929 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.62 45.0 3.75e-01 100.0% 43.0%
4957337 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.62 43.0 4.85e-01 81.2% 96.5%
4957408 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.61 50.0 5.17e-01 94.6% 96.2%
4354137 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.61 45.0 3.61e-01 100.0% 40.2%
4100130 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.61 43.0 3.45e-01 100.0% 36.4%
4012754 210.1.1.0 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.60 44.0 3.44e-01 100.0% 34.4%
5065044 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.60 41.0 4.69e-01 75.0% 100.0%
3983718 304.48.1.14 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF 0.59 51.0 5.06e-01 93.8% 98.3%
3197499 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.59 44.0 3.42e-01 100.0% 34.8%
3628751 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.59 53.0 4.50e-01 100.0% 90.8%
4141589 304.48.1.10 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › IMS 0.58 51.0 4.90e-01 100.0% 83.8%
3685955 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 40.0 4.49e-01 72.3% 97.6%
3374952 375.4.1.5 few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C 0.57 25.0 2.86e-01 75.9% 51.8%
3195236 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 40.0 4.31e-01 73.2% 92.2%
3716480 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.55 48.0 4.36e-01 100.0% 85.0%
4928824 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 40.0 4.29e-01 87.5% 95.8%
3701084 316.1.1.14 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD 0.52 39.0 3.33e-01 85.7% 47.1%
3941521 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.52 34.0 3.48e-01 80.4% 66.4%
4112511 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.52 41.0 3.98e-01 94.6% 76.8%
3721693 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.51 45.0 3.19e-01 100.0% 64.4%
D2 high residues 146-212
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00533.34 best BRCT 31.2 2.80e-07 97.0% 79.5%
CATH (84)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bu0A02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.88 82.0 7.51e-01 100.0% 81.0%
2nteB01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.88 81.0 7.01e-01 100.0% 74.7%
3u3zA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.87 80.0 6.97e-01 100.0% 73.2%
3oq0J00 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.87 80.0 7.00e-01 100.0% 92.6%
3olcX03 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.87 80.0 7.24e-01 100.0% 81.6%
1l0bA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.86 78.0 6.61e-01 100.0% 73.8%
3hufB02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.85 78.0 6.76e-01 100.0% 68.7%
3olcX02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.85 78.0 6.77e-01 100.0% 70.4%
7p0jA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.85 78.0 6.98e-01 100.0% 77.8%
4bu0A01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.84 77.0 6.71e-01 100.0% 72.4%
3jveA00 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.83 74.0 6.62e-01 100.0% 75.8%
6j0yA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.83 75.0 6.52e-01 100.0% 73.3%
4bmdA02 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.83 75.0 6.52e-01 100.0% 76.8%
1cdzA00 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.82 75.0 6.56e-01 100.0% 76.0%
2d8mA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.81 73.0 6.57e-01 100.0% 75.0%
1wf6A01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.81 74.0 6.06e-01 100.0% 59.3%
1gzhB01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.81 73.0 6.31e-01 100.0% 79.6%
4bmdA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.79 71.0 6.45e-01 100.0% 74.2%
2couA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.78 70.0 6.37e-01 100.0% 78.7%
2coeA01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.78 69.0 6.20e-01 100.0% 83.9%
1y81A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.74 65.0 5.46e-01 98.5% 98.3%
1a9yA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.73 66.0 4.59e-01 100.0% 92.9%
3wtcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.73 64.0 4.31e-01 100.0% 90.0%
3tjrA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.73 65.0 4.33e-01 100.0% 82.4%
2kpoA00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.72 64.0 5.43e-01 100.0% 83.6%
4y9dA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.72 64.0 4.38e-01 100.0% 85.5%
2duwA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.72 62.0 5.01e-01 100.0% 85.4%
3eagA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.71 56.0 5.08e-01 86.6% 96.8%
3phhA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.71 61.0 4.91e-01 95.5% 88.5%
5v7nA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 62.0 4.97e-01 100.0% 82.0%
4twbA01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.70 60.0 4.72e-01 100.0% 98.0%
5gizA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.70 60.0 4.94e-01 100.0% 86.8%
2eklA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.69 61.0 5.04e-01 100.0% 89.3%
2nxcA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 57.0 4.38e-01 92.5% 84.3%
6pexA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 60.0 4.87e-01 100.0% 88.3%
1ve3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 56.0 3.97e-01 92.5% 79.2%
2douA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.68 60.0 4.18e-01 100.0% 65.8%
4i9fA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.68 58.0 4.88e-01 95.5% 84.8%
2csuA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.68 60.0 4.49e-01 100.0% 89.8%
4g2nA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 59.0 4.82e-01 100.0% 87.6%
1wznA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 58.0 4.19e-01 95.5% 67.0%
3o3mD03 3.40.50.11900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 58.0 4.60e-01 100.0% 93.2%
8a57D01 3.40.50.11060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTPase HflX, N-terminal domain 0.67 59.0 5.15e-01 100.0% 100.0%
3bb8A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.67 58.0 3.84e-01 100.0% 46.5%
1o5zA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.66 57.0 3.81e-01 100.0% 81.3%
2cf5A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 58.0 4.44e-01 100.0% 80.9%
3d3uA01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.66 54.0 4.14e-01 94.0% 80.5%
2l69A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 55.0 4.53e-01 100.0% 86.6%
2f8lA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 52.0 3.65e-01 92.5% 69.7%
3df7A01 3.40.50.11770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 50.0 4.44e-01 85.1% 98.0%
1jvbA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 53.0 4.28e-01 95.5% 87.2%
4ilkA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 53.0 4.31e-01 94.0% 89.6%
3o03A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 54.0 3.78e-01 100.0% 83.9%
3w5jA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 55.0 4.05e-01 100.0% 74.2%
4p4gA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 53.0 4.34e-01 100.0% 89.2%
1o17D02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.63 54.0 3.78e-01 100.0% 85.8%
7ntgA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.63 54.0 4.06e-01 100.0% 75.1%
1lluA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 51.0 4.16e-01 95.5% 85.5%
4g1vA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.62 49.0 3.94e-01 88.1% 83.8%
3dnfA02 3.40.50.11270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 48.0 4.53e-01 88.1% 74.7%
1yb1B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 52.0 3.67e-01 100.0% 88.9%
1w36C01 3.40.50.10930 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 48.0 3.47e-01 91.0% 46.5%
3khkA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 52.0 3.40e-01 100.0% 76.0%
3ucxA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 50.0 3.48e-01 97.0% 79.1%
3i3wA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.60 46.0 4.36e-01 83.6% 70.7%
1zemA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 49.0 3.40e-01 97.0% 79.2%
1b0zA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.58 49.0 3.73e-01 100.0% 78.3%
1xriA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 47.0 3.72e-01 94.0% 55.6%
2hvwA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 45.0 3.53e-01 86.6% 79.6%
3icsA03 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.57 48.0 4.31e-01 100.0% 79.4%
2bd0A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 47.0 3.36e-01 97.0% 77.4%
1y8cA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 42.0 3.21e-01 85.1% 43.0%
2gb7D00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.56 44.0 2.98e-01 91.0% 44.9%
1vq2A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 41.0 3.14e-01 82.1% 86.7%
2vz9A05 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 3.06e-01 95.5% 60.0%
2pjdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 41.0 3.16e-01 86.6% 45.2%
4yacA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 44.0 3.19e-01 98.5% 77.3%
1j0aA02 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 3.98e-01 100.0% 67.3%
5je6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 39.0 2.85e-01 86.6% 33.9%
1ig3A02 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.52 45.0 3.58e-01 100.0% 72.8%
1sqgA04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 39.0 2.99e-01 89.6% 52.0%
1zymA01 3.50.30.10 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain 0.50 44.0 3.65e-01 100.0% 62.8%
3r1iB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 42.0 2.96e-01 100.0% 49.0%
2r6zA01 3.40.1630.10 Alpha Beta › 3-Layer(aba) Sandwich › S-adenosyl-L-methionine-dependent methyltransferases › YhiQ-like domain 0.50 36.0 3.86e-01 91.0% 98.1%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963151 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.94 88.0 8.41e-01 98.5% 90.7%
4050580 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.91 85.0 8.18e-01 100.0% 94.7%
3714816 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.91 85.0 7.26e-01 100.0% 74.0%
3616608 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.89 83.0 7.13e-01 100.0% 71.0%
3233287 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.89 83.0 7.25e-01 100.0% 73.7%
3737313 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.89 83.0 7.09e-01 100.0% 68.0%
3904888 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.88 83.0 7.74e-01 100.0% 85.0%
3990358 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.88 81.0 6.49e-01 100.0% 66.4%
3925665 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.88 82.0 7.03e-01 100.0% 71.0%
4024972 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.88 82.0 7.30e-01 100.0% 92.2%
4520163 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.88 82.0 7.40e-01 100.0% 79.5%
3588273 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.88 82.0 7.04e-01 100.0% 83.8%
3537238 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.88 81.0 6.86e-01 100.0% 68.6%
4242220 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.88 82.0 7.32e-01 100.0% 75.6%
3230060 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.88 81.0 7.23e-01 100.0% 76.7%
3506892 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.87 81.0 7.11e-01 100.0% 71.6%
3483762 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.87 81.0 6.72e-01 100.0% 67.3%
3183466 7568.1.1.12 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › DBF4_BRCT 0.87 81.0 6.86e-01 100.0% 65.7%
4199854 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.87 81.0 7.59e-01 100.0% 92.5%
3867917 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.87 80.0 6.92e-01 100.0% 72.0%
4015594 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.87 81.0 6.62e-01 100.0% 62.6%
4049938 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.87 81.0 7.79e-01 100.0% 90.7%
2601663 7568.1.1.12 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › DBF4_BRCT 0.87 80.0 6.44e-01 100.0% 71.5%
4606076 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.87 81.0 6.99e-01 100.0% 70.4%
3185673 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.87 81.0 6.40e-01 100.0% 57.6%
3785790 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.87 81.0 7.55e-01 100.0% 87.5%
3592941 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.87 80.0 7.32e-01 100.0% 83.5%
3616609 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.87 80.0 6.37e-01 100.0% 56.0%
3401281 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.87 80.0 7.03e-01 100.0% 72.6%
4285686 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.87 81.0 7.80e-01 100.0% 93.2%
3953500 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.87 79.0 6.64e-01 100.0% 63.6%
4031470 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.87 80.0 6.90e-01 100.0% 82.0%
3623593 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.87 80.0 6.14e-01 100.0% 49.3%
4001966 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.86 79.0 6.52e-01 100.0% 63.5%
4589655 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.86 81.0 7.53e-01 100.0% 85.0%
3270246 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.86 79.0 7.09e-01 100.0% 78.9%
3739927 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.86 79.0 6.50e-01 100.0% 59.1%
3210518 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.86 79.0 6.96e-01 100.0% 75.8%
3573818 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.86 79.0 6.23e-01 100.0% 52.3%
4633934 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.86 79.0 7.52e-01 100.0% 88.5%
3708676 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.86 79.0 7.23e-01 100.0% 81.2%
3366583 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.85 78.0 6.62e-01 100.0% 65.7%
3694717 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.85 78.0 7.02e-01 100.0% 80.0%
3380599 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.85 77.0 6.82e-01 100.0% 75.8%
3697099 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.85 78.0 6.42e-01 100.0% 61.7%
3793937 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.85 77.0 6.66e-01 100.0% 71.0%
3730516 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.85 78.0 6.83e-01 100.0% 73.7%
3484123 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.84 77.0 6.80e-01 100.0% 71.6%
4091629 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.84 77.0 7.28e-01 100.0% 86.3%
3536072 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.84 77.0 6.94e-01 100.0% 81.1%
3958130 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.84 77.0 7.25e-01 100.0% 86.3%
3436451 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.84 77.0 6.41e-01 100.0% 66.4%
3730526 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.84 76.0 6.88e-01 100.0% 80.0%
3743319 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.84 76.0 6.60e-01 100.0% 74.0%
3447755 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.84 76.0 6.04e-01 100.0% 55.4%
3607749 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.84 76.0 5.91e-01 100.0% 65.0%
3278734 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.84 77.0 6.96e-01 100.0% 87.5%
3899277 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.84 76.0 6.70e-01 100.0% 76.8%
3443378 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.83 75.0 6.54e-01 100.0% 71.0%
4136176 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.83 77.0 7.02e-01 100.0% 81.2%
4308622 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.83 76.0 7.16e-01 100.0% 92.5%
3928785 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.83 76.0 6.68e-01 100.0% 70.5%
4129749 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.83 76.0 7.11e-01 100.0% 86.3%
3429241 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.83 74.0 6.37e-01 100.0% 67.6%
4307693 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.83 75.0 7.25e-01 100.0% 93.3%
3701657 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.82 75.0 6.76e-01 100.0% 75.6%
3781701 7568.1.1.2 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › PTCB-BRCT 0.82 74.0 5.83e-01 100.0% 68.1%
3258560 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.82 75.0 6.59e-01 100.0% 75.8%
3781702 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.82 74.0 6.42e-01 100.0% 71.0%
4260626 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.82 74.0 6.55e-01 100.0% 72.6%
3301912 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.81 66.0 6.37e-01 88.1% 80.0%
143537 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.81 74.0 6.36e-01 100.0% 72.3%
3834258 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.81 72.0 6.19e-01 100.0% 68.6%
3410319 7568.1.1.6 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › RTT107_BRCT_5 0.80 72.0 6.00e-01 100.0% 59.1%
3400469 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.80 72.0 6.50e-01 100.0% 74.4%
146907 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.79 70.0 6.04e-01 100.0% 65.1%
4241343 2007.2.2.4 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › PTPase 0.76 67.0 6.40e-01 100.0% 93.8%
3222305 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.76 68.0 6.16e-01 100.0% 82.2%
3513740 7568.1.1.1 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT 0.76 68.0 6.30e-01 100.0% 82.4%
3512293 7568.1.1.4 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › BRCT_2 0.75 67.0 5.71e-01 100.0% 62.7%
4945154 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.74 64.0 4.69e-01 95.5% 98.3%
4964951 2007.15.1.18 a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › DUF7509 0.72 62.0 4.71e-01 100.0% 78.8%
3993706 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.72 56.0 5.39e-01 86.6% 74.7%
3646136 7568.1.1.0 a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain 0.71 56.0 5.45e-01 88.1% 82.7%
4937321 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.70 62.0 4.79e-01 100.0% 96.7%
3709747 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.70 61.0 4.21e-01 100.0% 43.4%
3527792 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.70 53.0 4.75e-01 86.6% 57.9%
3586100 206.1.3.12 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.67 59.0 3.57e-01 100.0% 77.8%
3390461 206.1.3.12 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.66 58.0 3.66e-01 100.0% 92.9%
5070596 7566.1.1.2 a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N 0.65 57.0 4.21e-01 100.0% 57.8%
3404479 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.65 50.0 5.24e-01 85.1% 98.3%
3346778 2003.1.1.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.65 56.0 4.03e-01 100.0% 56.7%
4579379 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.62 51.0 3.93e-01 95.5% 73.2%
3839413 2008.1.1.34 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc 0.62 48.0 3.86e-01 88.1% 87.6%
4620379 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.62 50.0 3.96e-01 95.5% 75.9%
4307121 2003.1.1.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH,SDH_C 0.60 50.0 3.89e-01 100.0% 74.0%
3412961 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 51.0 3.18e-01 100.0% 45.3%
4995715 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 46.0 3.23e-01 100.0% 77.6%
4941571 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.54 43.0 2.59e-01 92.5% 12.0%
4662521 2484.1.1.146 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 0.52 44.0 3.03e-01 100.0% 56.5%