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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00615

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00615

Identity

Kingdom:
phage

Quality

78.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-10_69-158
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7tn8A01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 46.0 3.92e-01 98.0% 83.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3711372 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 2.94e-01 76.0% 88.0%
D2 medium residues 11-68
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tqdC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.74e-01 94.8% 86.5%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.10e-01 77.6% 79.1%
2byeA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 42.0 3.63e-01 100.0% 90.1%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 39.0 3.48e-01 93.1% 88.3%
1vw4G00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.50 36.0 3.67e-01 86.2% 80.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230316 109.4.1.587 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mon2_C 0.62 47.0 2.76e-01 84.5% 11.0%
5075731 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.59 49.0 4.21e-01 100.0% 69.5%
3785655 109.26.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains 0.59 42.0 3.07e-01 77.6% 72.6%
3170688 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.52 42.0 4.19e-01 94.8% 98.3%
4945733 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.52 37.0 2.53e-01 77.6% 60.8%
3401129 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 42.0 2.92e-01 100.0% 34.5%