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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00640
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00640
Identity
- Kingdom:
- phage
Quality
75.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-67
Domain cluster:
rep: MK448710.1__QBX16110.1__Javan233_0030__00030__D34-99
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.80 | 65.0 | 6.15e-01 | 96.8% | 75.3% |
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.65 | 59.0 | 5.76e-01 | 100.0% | 91.3% |
| 3f5rA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 46.0 | 3.84e-01 | 79.4% | 68.1% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 45.0 | 4.67e-01 | 82.5% | 81.7% |
| 3zx7A02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.62 | 44.0 | 3.54e-01 | 77.8% | 94.2% |
| 3qijB03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 45.0 | 4.07e-01 | 79.4% | 71.9% |
| 1h4rA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 44.0 | 3.97e-01 | 79.4% | 73.6% |
| 2ktyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 44.0 | 3.59e-01 | 85.7% | 74.6% |
| 2bouA02 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.58 | 36.0 | 4.06e-01 | 96.8% | 88.9% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 49.0 | 4.32e-01 | 95.2% | 69.9% |
| 1jlxA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 42.0 | 3.38e-01 | 82.5% | 97.9% |
| 2dyiA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.57 | 47.0 | 4.56e-01 | 96.8% | 94.4% |
| 6u10A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 45.0 | 3.00e-01 | 92.1% | 44.2% |
| 1nqnA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.55 | 46.0 | 3.89e-01 | 98.4% | 98.3% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 46.0 | 4.13e-01 | 95.2% | 72.2% |
| 6n36A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 45.0 | 2.99e-01 | 92.1% | 44.9% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 46.0 | 3.85e-01 | 100.0% | 64.7% |
| 4bj8K00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.54 | 41.0 | 3.47e-01 | 87.3% | 96.7% |
| 2jiiA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 45.0 | 3.85e-01 | 98.4% | 82.7% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.54 | 36.0 | 3.70e-01 | 98.4% | 73.8% |
| 3bdrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 42.0 | 3.35e-01 | 95.2% | 85.3% |
| 3dlbB03 | 2.170.260.50 | Mainly Beta › Beta Complex › paz domain › | 0.53 | 43.0 | 4.00e-01 | 95.2% | 95.4% |
| 2rsvA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 46.0 | 2.84e-01 | 100.0% | 24.6% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.53 | 45.0 | 4.34e-01 | 93.7% | 91.5% |
| 1n4kA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 42.0 | 3.44e-01 | 96.8% | 87.2% |
| 3isxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.53 | 44.0 | 4.01e-01 | 96.8% | 79.8% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.52 | 44.0 | 3.80e-01 | 100.0% | 91.5% |
| 2j5uA02 | 2.40.10.340 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 | 0.52 | 38.0 | 3.59e-01 | 100.0% | 63.1% |
| 3n6rA03 | 3.30.700.30 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.51 | 42.0 | 3.45e-01 | 98.4% | 75.9% |
| 6l4qB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 34.0 | 2.77e-01 | 71.4% | 76.3% |
| 7asgA02 | 2.30.180.10 | Mainly Beta › Roll › FAS1 domain › FAS1 domain | 0.50 | 38.0 | 3.18e-01 | 85.7% | 44.5% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4665407 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.69 | 48.0 | 5.24e-01 | 85.7% | 92.0% |
| 3634374 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.67 | 45.0 | 4.96e-01 | 95.2% | 88.0% |
| 4165723 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.67 | 49.0 | 4.92e-01 | 95.2% | 76.9% |
| 3480535 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 50.0 | 4.25e-01 | 81.0% | 63.8% |
| 4111597 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.64 | 45.0 | 4.53e-01 | 98.4% | 72.3% |
| 3242374 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.64 | 47.0 | 3.95e-01 | 79.4% | 66.7% |
| 4009688 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.63 | 49.0 | 4.87e-01 | 93.7% | 81.5% |
| 2803945 | 4.1.1.24 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e | 0.63 | 49.0 | 3.77e-01 | 87.3% | 37.6% |
| 3624239 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.62 | 43.0 | 3.88e-01 | 73.0% | 81.1% |
| 3649175 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 45.0 | 2.78e-01 | 98.4% | 13.2% |
| 4001788 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.61 | 45.0 | 3.49e-01 | 79.4% | 60.0% |
| 4210311 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.59 | 48.0 | 4.06e-01 | 90.5% | 88.9% |
| None | — | 0.59 | 43.0 | 3.73e-01 | 79.4% | 64.8% | |
| 3996530 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.58 | 39.0 | 3.92e-01 | 71.4% | 67.7% |
| 3660563 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 43.0 | 4.27e-01 | 79.4% | 96.9% |
| 3576281 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.58 | 38.0 | 3.80e-01 | 71.4% | 64.6% |
| 3909424 | 389.1.1.7 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA | 0.57 | 40.0 | 4.21e-01 | 96.8% | 85.5% |
| 3893905 | 389.1.1.7 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA | 0.57 | 40.0 | 4.08e-01 | 98.4% | 78.3% |
| 4047125 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.56 | 40.0 | 3.97e-01 | 76.2% | 96.9% |
| 3199895 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 48.0 | 4.23e-01 | 95.2% | 68.4% |
| 4526316 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 48.0 | 4.21e-01 | 95.2% | 68.4% |
| 4163711 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 48.0 | 4.37e-01 | 95.2% | 76.5% |
| 4281020 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 48.0 | 4.22e-01 | 95.2% | 68.4% |
| 4316004 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 49.0 | 4.41e-01 | 95.2% | 76.5% |
| 2814716 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 48.0 | 4.20e-01 | 95.2% | 70.5% |
| 3292420 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 48.0 | 4.22e-01 | 93.7% | 71.1% |
| 4273414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.55 | 47.0 | 4.57e-01 | 93.7% | 91.4% |
| 3242263 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.55 | 34.0 | 3.50e-01 | 98.4% | 63.3% |
| 4184958 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 46.0 | 4.20e-01 | 93.7% | 75.3% |
| 4854958 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.55 | 46.0 | 4.03e-01 | 93.7% | 66.7% |
| 1117891 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.55 | 44.0 | 3.70e-01 | 95.2% | 93.4% |
| 3973553 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 46.0 | 4.46e-01 | 93.7% | 91.4% |
| 4086465 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.55 | 45.0 | 4.39e-01 | 96.8% | 91.4% |
| 3925891 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 47.0 | 4.21e-01 | 98.4% | 77.8% |
| 4512995 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.54 | 46.0 | 4.50e-01 | 95.2% | 92.9% |
| 4087314 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.54 | 46.0 | 4.30e-01 | 95.2% | 81.2% |
| 3510937 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.54 | 47.0 | 3.92e-01 | 93.7% | 81.9% |
| 3606615 | 241.10.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain | 0.54 | 45.0 | 4.12e-01 | 98.4% | 88.9% |
| 4047241 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.54 | 45.0 | 3.96e-01 | 93.7% | 67.4% |
| 3234172 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.54 | 45.0 | 4.01e-01 | 93.7% | 83.3% |
| 4128405 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.54 | 45.0 | 4.35e-01 | 92.1% | 90.0% |
| 3610137 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 43.0 | 2.64e-01 | 93.7% | 92.6% |
| 2801583 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.53 | 44.0 | 3.68e-01 | 98.4% | 83.5% |
| 3389763 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.53 | 45.0 | 3.94e-01 | 93.7% | 80.0% |
| 4019192 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.53 | 44.0 | 3.39e-01 | 100.0% | 62.4% |
| 4204303 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 44.0 | 3.93e-01 | 93.7% | 71.1% |
| 3513932 | 214.1.1.10 ↗ | a+b two layers › SH2 › SH2 › SH2 › DUF7145 | 0.52 | 41.0 | 3.51e-01 | 92.1% | 76.5% |
| 3741307 | 11.1.4.16 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMC7_beta-sandw | 0.52 | 43.0 | 3.68e-01 | 100.0% | 89.6% |
| 4939349 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.52 | 35.0 | 2.95e-01 | 71.4% | 73.0% |
| 5081724 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 35.0 | 2.53e-01 | 71.4% | 24.5% |
| 3443105 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.51 | 40.0 | 2.62e-01 | 96.8% | 36.5% |
| 4489474 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.50 | 40.0 | 3.98e-01 | 100.0% | 85.7% |
| 5065884 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.50 | 34.0 | 2.83e-01 | 71.4% | 72.8% |