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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00650
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00650
Identity
- Kingdom:
- phage
Quality
95.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-80
Domain cluster:
rep: gwf1_scaffold_41_prodigal-single.1__X__X__00300__D8-97
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.69 | 47.0 | 4.69e-01 | 70.0% | 73.6% |
| 5d1oA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.69 | 47.0 | 4.63e-01 | 70.0% | 75.3% |
| 4d05A01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.65 | 45.0 | 4.42e-01 | 71.4% | 77.6% |
| 1fviA01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.62 | 43.0 | 4.19e-01 | 72.9% | 77.2% |
| 2lcjA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.58 | 44.0 | 3.35e-01 | 85.7% | 96.2% |
| 2im9A02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.56 | 41.0 | 3.34e-01 | 81.4% | 82.3% |
| 5cbeE00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 28.0 | 2.98e-01 | 72.9% | 56.2% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.52 | 34.0 | 3.40e-01 | 90.0% | 63.9% |
| 2j8gA03 | 2.20.120.10 | Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 | 0.51 | 32.0 | 3.46e-01 | 71.4% | 75.9% |
| 2vgnA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.51 | 37.0 | 3.14e-01 | 78.6% | 70.9% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.50 | 35.0 | 2.64e-01 | 74.3% | 34.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3315374 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.64 | 26.0 | 3.46e-01 | 71.4% | 62.9% |
| 4349826 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.62 | 48.0 | 4.32e-01 | 85.7% | 70.0% |
| 3281348 | 4221.1.1.0 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like | 0.60 | 46.0 | 4.19e-01 | 85.7% | 86.0% |
| 3323055 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.59 | 44.0 | 4.59e-01 | 82.9% | 95.4% |
| 4992901 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.56 | 38.0 | 2.69e-01 | 74.3% | 56.2% |
| 4985499 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.54 | 41.0 | 3.05e-01 | 84.3% | 37.5% |
| 2560565 | 6041.1.1.0 ↗ | a+b two layers › DUF1107-like › DUF1107-like › DUF1107-like | 0.54 | 41.0 | 3.65e-01 | 85.7% | 87.0% |
| 4972340 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.53 | 25.0 | 2.67e-01 | 70.0% | 44.6% |
| 3597533 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.53 | 36.0 | 3.17e-01 | 70.0% | 76.2% |
| 4956911 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.52 | 39.0 | 2.86e-01 | 81.4% | 66.8% |
| 4174422 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.52 | 37.0 | 3.18e-01 | 80.0% | 54.6% |
| 4659650 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 37.0 | 3.48e-01 | 91.4% | 62.2% |
| 4019840 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.50 | 39.0 | 3.27e-01 | 84.3% | 80.0% |