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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00680
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00680
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-62
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xd7A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 47.0 | 3.72e-01 | 86.7% | 31.9% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 58.0 | 4.43e-01 | 88.3% | 43.4% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 60.0 | 4.53e-01 | 93.3% | 42.5% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 57.0 | 4.47e-01 | 93.3% | 46.0% |
| 2yzsA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.65 | 50.0 | 3.36e-01 | 83.3% | 29.8% |
| 3j7aY00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 46.0 | 3.44e-01 | 78.3% | 72.7% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 3.78e-01 | 88.3% | 35.8% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 3.89e-01 | 81.7% | 52.6% |
| 1hc7A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 45.0 | 2.92e-01 | 86.7% | 19.0% |
| 2a61B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 49.0 | 3.84e-01 | 100.0% | 45.3% |
| 3spdA00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.56 | 42.0 | 2.89e-01 | 80.0% | 30.5% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.43e-01 | 73.3% | 51.7% |
| 1stzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.67e-01 | 81.7% | 56.5% |
| 2pmeA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 48.0 | 3.04e-01 | 98.3% | 51.7% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 43.0 | 3.65e-01 | 91.7% | 55.0% |
| 1zowA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 37.0 | 2.83e-01 | 73.3% | 31.7% |
| 2doaA00 | 1.10.10.2670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase | 0.53 | 34.0 | 2.92e-01 | 70.0% | 37.5% |
| 2obpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 30.0 | 2.72e-01 | 70.0% | 43.2% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3221467 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.76 | 68.0 | 4.22e-01 | 100.0% | 68.4% |
| 3267186 | 4203.1.1.1 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 | 0.74 | 61.0 | 5.32e-01 | 86.7% | 85.9% |
| 3268630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 32.0 | 2.72e-01 | 75.0% | 27.4% |
| 5079289 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 57.0 | 4.65e-01 | 83.3% | 92.4% |
| 5064378 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.72 | 67.0 | 4.32e-01 | 100.0% | 95.8% |
| 3176105 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.71 | 55.0 | 3.48e-01 | 93.3% | 17.2% |
| 3394655 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.70 | 58.0 | 3.59e-01 | 90.0% | 17.3% |
| 3731212 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.68 | 59.0 | 5.18e-01 | 95.0% | 65.9% |
| 3881031 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.66 | 53.0 | 3.55e-01 | 93.3% | 73.8% |
| 3416265 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.64 | 56.0 | 3.44e-01 | 100.0% | 53.6% |
| 5042767 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 48.0 | 4.07e-01 | 80.0% | 55.1% |
| 4011979 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 39.0 | 3.15e-01 | 91.7% | 30.4% |
| 4020727 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.63 | 50.0 | 4.00e-01 | 90.0% | 68.8% |
| 3410018 | 603.1.1.104 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 | 0.63 | 57.0 | 3.44e-01 | 100.0% | 17.3% |
| 3177998 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.62 | 54.0 | 3.24e-01 | 95.0% | 28.6% |
| 4972751 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.62 | 47.0 | 3.97e-01 | 85.0% | 50.5% |
| 3798586 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.61 | 52.0 | 3.72e-01 | 95.0% | 38.3% |
| 5031515 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.61 | 46.0 | 3.99e-01 | 83.3% | 60.0% |
| 3230649 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.60 | 52.0 | 3.33e-01 | 96.7% | 61.0% |
| 3230586 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.60 | 51.0 | 3.53e-01 | 93.3% | 53.0% |
| 4934857 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.60 | 40.0 | 3.59e-01 | 70.0% | 49.4% |
| 3896661 | 109.4.1.1486 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS5_N, INTS5_C | 0.59 | 54.0 | 2.94e-01 | 100.0% | 10.7% |
| 4014086 | 109.4.1.777 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 50.0 | 3.07e-01 | 90.0% | 67.2% |
| 5006819 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.59 | 42.0 | 3.67e-01 | 76.7% | 52.6% |
| 1511065 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.59 | 47.0 | 4.03e-01 | 95.0% | 88.0% |
| 3205862 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 40.0 | 3.29e-01 | 70.0% | 39.1% |
| 5074949 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 43.0 | 3.82e-01 | 81.7% | 54.4% |
| 4929718 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 3.83e-01 | 90.0% | 52.4% |
| 379864 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.57 | 46.0 | 3.70e-01 | 95.0% | 43.8% |
| 4094371 | 304.55.1.13 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase | 0.57 | 42.0 | 2.95e-01 | 78.3% | 81.1% |
| 4026891 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.57 | 39.0 | 3.48e-01 | 73.3% | 50.0% |
| 3943470 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.56 | 38.0 | 3.43e-01 | 70.0% | 87.1% |
| 5061540 | 2498.1.1.147 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF7897 | 0.56 | 46.0 | 2.85e-01 | 88.3% | 61.8% |
| 3357520 | 310.2.1.28 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › Myb_DNA-bind_3 | 0.55 | 39.0 | 3.50e-01 | 75.0% | 54.1% |
| 3283039 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 44.0 | 3.40e-01 | 95.0% | 37.9% |
| 3702446 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 39.0 | 2.74e-01 | 75.0% | 58.9% |
| 4943120 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.42e-01 | 81.7% | 91.0% |
| 119010 | 101.1.8.4 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Flp_C | 0.52 | 36.0 | 2.97e-01 | 80.0% | 36.6% |
| 3965485 | 5084.5.3.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel | 0.52 | 43.0 | 2.43e-01 | 93.3% | 81.8% |
| 4030472 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.52 | 44.0 | 3.20e-01 | 100.0% | 95.8% |
| 5011299 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 34.0 | 2.81e-01 | 70.0% | 34.8% |
| 3731261 | 101.1.2.520 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7779 | 0.52 | 34.0 | 3.01e-01 | 71.7% | 43.2% |
| 5077744 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.52 | 41.0 | 3.36e-01 | 88.3% | 95.7% |
| 3703451 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.51 | 36.0 | 3.27e-01 | 80.0% | 52.2% |
D2
high
residues 79-200
Domain cluster:
rep: IMGVR_UViG_3300031280_000001-3300031280-Ga0307428_100016476__D52-164
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01832.26 best | Glucosaminidase | 50.5 | 4.70e-13 | 95.9% | 89.4% |