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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00698
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00698
Identity
- Kingdom:
- phage
Quality
50.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 294-426
D2
medium
residues 66-133
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w36B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 53.0 | 3.57e-01 | 83.8% | 33.1% |
| 2g7sA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 47.0 | 3.44e-01 | 76.5% | 44.7% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 45.0 | 4.01e-01 | 76.5% | 82.5% |
| 2wpgA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 32.0 | 2.99e-01 | 92.6% | 37.9% |
| 1te4A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.62 | 40.0 | 3.73e-01 | 70.6% | 51.7% |
| 3c2gA02 | 1.10.10.1630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like | 0.62 | 42.0 | 4.23e-01 | 70.6% | 77.9% |
| 7watB02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 51.0 | 3.39e-01 | 98.5% | 81.8% |
| 2w45A01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.59 | 44.0 | 3.71e-01 | 80.9% | 50.0% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.58 | 40.0 | 4.02e-01 | 98.5% | 71.6% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.58 | 45.0 | 3.91e-01 | 82.4% | 62.4% |
| 1d9cA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 43.0 | 3.63e-01 | 86.8% | 69.4% |
| 1ewrA02 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.55 | 47.0 | 4.00e-01 | 98.5% | 79.8% |
| 5tl8A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 46.0 | 2.87e-01 | 98.5% | 73.6% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.55 | 39.0 | 3.70e-01 | 77.9% | 89.4% |
| 4eqyA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.55 | 45.0 | 4.46e-01 | 92.6% | 95.7% |
| 2oceA01 | 1.10.10.650 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like | 0.54 | 46.0 | 3.95e-01 | 98.5% | 58.4% |
| 3fbiD00 | 1.10.10.1340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Mediator of RNA polymerase II, submodule Med31 (Soh1) | 0.53 | 40.0 | 3.65e-01 | 83.8% | 64.9% |
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.52 | 43.0 | 3.32e-01 | 98.5% | 83.1% |
| 1zc6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 35.0 | 2.78e-01 | 72.1% | 61.5% |
| 2ocgA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 35.0 | 2.44e-01 | 73.5% | 47.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3690281 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.67 | 54.0 | 3.97e-01 | 89.7% | 34.1% |
| 2550 | 101.1.1.59 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1_2 | 0.65 | 58.0 | 4.85e-01 | 100.0% | 66.7% |
| 4014996 | 7094.1.1.0 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin | 0.62 | 52.0 | 4.66e-01 | 98.5% | 70.0% |
| 3474352 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 49.0 | 4.99e-01 | 97.1% | 93.8% |
| 3709256 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 45.0 | 3.02e-01 | 79.4% | 26.8% |
| 4028433 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 47.0 | 4.48e-01 | 83.8% | 81.2% |
| 3542362 | 389.1.1.127 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ANATO | 0.59 | 41.0 | 4.55e-01 | 80.9% | 100.0% |
| 5009781 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.59 | 50.0 | 4.20e-01 | 98.5% | 82.5% |
| 5040013 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.57 | 42.0 | 3.85e-01 | 79.4% | 87.8% |
| 4970188 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.56 | 44.0 | 3.46e-01 | 89.7% | 54.5% |
| 3216519 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.56 | 40.0 | 3.70e-01 | 80.9% | 57.8% |
| 4957648 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.55 | 40.0 | 3.27e-01 | 76.5% | 58.6% |
| 3928936 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.54 | 39.0 | 3.35e-01 | 80.9% | 46.1% |
| 3355320 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.53 | 35.0 | 3.33e-01 | 82.4% | 57.5% |
| 1833145 | 3548.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription submodule Med7N/31 › Mediator of RNA polymerase II transcription submodule Med7N/31 › Mediator of RNA polymerase II transcription submodule Med7N/31 | 0.53 | 40.0 | 3.69e-01 | 85.3% | 66.0% |
| 3811150 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.52 | 36.0 | 3.52e-01 | 100.0% | 65.3% |
| 3620375 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.52 | 43.0 | 3.47e-01 | 100.0% | 94.2% |
D3
medium
residues 134-244