←Back to structures

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00707

Bact-Vir

RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00707

Identity

Kingdom:
phage

Quality

70.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-70
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.12e-01 100.0% 65.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 45.0 5.20e-01 81.8% 91.3%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.71 46.0 3.88e-01 100.0% 39.3%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 45.0 5.14e-01 100.0% 89.8%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 5.01e-01 97.0% 89.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.37e-01 100.0% 94.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 4.36e-01 100.0% 60.3%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 43.0 4.93e-01 100.0% 89.6%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 4.88e-01 100.0% 88.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.80e-01 100.0% 80.4%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 4.32e-01 100.0% 62.0%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 50.0 4.08e-01 78.8% 73.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.29e-01 100.0% 62.3%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.67 46.0 4.62e-01 78.8% 71.2%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.52e-01 100.0% 73.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.66 48.0 4.86e-01 100.0% 77.6%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 44.0 4.61e-01 100.0% 78.0%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.65 44.0 3.36e-01 71.2% 76.9%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.35e-01 100.0% 68.2%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 3.61e-01 100.0% 35.5%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.64 56.0 5.25e-01 100.0% 98.8%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 52.0 3.14e-01 90.9% 41.3%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 46.0 3.86e-01 77.3% 69.6%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 42.0 4.58e-01 100.0% 83.3%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 45.0 3.99e-01 77.3% 80.4%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 45.0 3.71e-01 100.0% 40.8%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.17e-01 95.5% 45.8%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.62 55.0 3.93e-01 100.0% 82.1%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 47.0 4.71e-01 100.0% 80.0%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.14e-01 93.9% 39.1%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 40.0 4.07e-01 100.0% 66.7%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.62 51.0 4.53e-01 98.5% 62.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.27e-01 100.0% 63.9%
3mtsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 38.0 3.94e-01 90.9% 67.7%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.60 52.0 4.81e-01 100.0% 94.3%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 43.0 3.57e-01 78.8% 62.4%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.59 44.0 3.78e-01 100.0% 48.2%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.32e-01 93.9% 100.0%
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.59 47.0 4.40e-01 89.4% 85.4%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.58 48.0 4.54e-01 95.5% 100.0%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.58 45.0 3.81e-01 100.0% 51.4%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.58 38.0 3.45e-01 100.0% 46.9%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 3.66e-01 93.9% 100.0%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 41.0 3.31e-01 75.8% 94.4%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 3.86e-01 97.0% 59.7%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.68e-01 93.9% 46.3%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 45.0 3.24e-01 98.5% 80.9%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 44.0 4.14e-01 93.9% 92.8%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.74e-01 100.0% 91.9%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 41.0 4.21e-01 90.9% 91.8%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 44.0 3.60e-01 98.5% 81.7%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.62e-01 100.0% 79.4%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 45.0 3.18e-01 100.0% 80.9%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 42.0 3.50e-01 97.0% 85.2%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 40.0 3.26e-01 87.9% 84.6%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 43.0 3.50e-01 100.0% 84.6%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033600 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 51.0 5.80e-01 71.2% 81.6%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 55.0 5.40e-01 100.0% 65.7%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 50.0 5.18e-01 100.0% 69.4%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 56.0 5.70e-01 100.0% 76.9%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 52.0 5.62e-01 100.0% 85.5%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.73 46.0 4.89e-01 100.0% 72.4%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 47.0 4.78e-01 100.0% 67.7%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 48.0 4.90e-01 100.0% 70.8%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 48.0 4.97e-01 100.0% 75.0%
3996278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 45.0 3.68e-01 100.0% 35.0%
3616243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 46.0 4.99e-01 100.0% 80.0%
3299797 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.71 45.0 4.75e-01 100.0% 71.7%
4316037 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.71 52.0 4.33e-01 77.3% 72.7%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.70 45.0 4.89e-01 100.0% 78.2%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 4.08e-01 100.0% 41.7%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 45.0 4.20e-01 100.0% 51.8%
3907619 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 45.0 4.17e-01 100.0% 51.8%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 44.0 4.95e-01 100.0% 86.0%
4656461 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 45.0 4.72e-01 100.0% 73.3%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.69 48.0 4.52e-01 100.0% 60.0%
3218198 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 45.0 4.83e-01 100.0% 80.0%
171891 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.68 45.0 4.88e-01 100.0% 81.8%
4246480 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 51.0 4.48e-01 78.8% 81.1%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 4.21e-01 100.0% 54.1%
3266626 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.67 58.0 5.16e-01 100.0% 75.8%
4105189 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.67 50.0 4.40e-01 78.8% 81.1%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 4.65e-01 100.0% 75.0%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.67 43.0 4.50e-01 100.0% 71.0%
3947980 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 48.0 4.25e-01 78.8% 80.0%
3451171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.63e-01 100.0% 73.8%
3772638 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.65 47.0 4.45e-01 100.0% 63.0%
5080210 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.65 54.0 3.78e-01 92.4% 81.8%
4078120 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.65 46.0 4.97e-01 100.0% 90.9%
3781710 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.65 46.0 4.38e-01 100.0% 62.5%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.14e-01 100.0% 72.9%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.32e-01 100.0% 61.3%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.45e-01 81.8% 63.7%
2701178 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.64 47.0 4.33e-01 100.0% 59.8%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.08e-01 100.0% 56.5%
3936053 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.63 45.0 4.52e-01 100.0% 72.9%
3227009 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.63 46.0 4.45e-01 100.0% 69.3%
4265819 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 46.0 4.06e-01 78.8% 80.0%
3740204 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.63 45.0 4.21e-01 100.0% 60.0%
4368436 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.63 51.0 3.36e-01 90.9% 60.3%
4518211 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.62 45.0 3.25e-01 77.3% 40.0%
3960372 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 45.0 4.14e-01 77.3% 85.9%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 46.0 4.34e-01 100.0% 66.3%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 5.14e-01 100.0% 85.3%
3251414 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.56e-01 100.0% 59.1%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.44e-01 100.0% 67.1%
4613812 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.38e-01 100.0% 67.1%
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 46.0 4.31e-01 81.8% 72.5%
4220126 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 47.0 4.31e-01 100.0% 64.7%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 50.0 4.65e-01 100.0% 72.9%
2581323 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.60 39.0 3.87e-01 75.8% 62.0%
3447802 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 47.0 4.28e-01 87.9% 78.9%
3743614 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.59 43.0 4.45e-01 100.0% 86.7%
4555816 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.18e-01 100.0% 64.7%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.50e-01 100.0% 76.0%
3595169 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.70e-01 100.0% 84.3%
4228570 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.59e-01 100.0% 76.2%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.67e-01 100.0% 82.9%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 52.0 4.59e-01 100.0% 73.7%
4606231 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 51.0 4.50e-01 95.5% 76.3%
5015593 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.57 41.0 3.46e-01 87.9% 42.5%
3427504 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.57 48.0 4.81e-01 100.0% 91.4%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 49.0 4.50e-01 100.0% 77.8%
3834112 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 50.0 4.71e-01 100.0% 87.5%
3645395 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 49.0 4.66e-01 100.0% 87.5%
3601070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.52e-01 100.0% 89.2%
4653170 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 42.0 3.75e-01 83.3% 82.1%
3413401 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.64e-01 89.4% 19.0%
3572103 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.54 46.0 3.74e-01 100.0% 83.7%
4018873 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 44.0 3.44e-01 92.4% 51.3%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 46.0 4.24e-01 100.0% 96.5%
2841854 265.1.1.1 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.52 43.0 3.58e-01 100.0% 97.0%
3354387 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.51 42.0 3.98e-01 100.0% 80.0%