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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00725
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00725
Identity
- Kingdom:
- phage
Quality
83.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 168-255
Domain cluster:
rep: MK433262.1__QAY16617.1__SEA_NIMROD_129__00127__D60-125
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k6lG00 | 3.90.210.10 | Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A | 0.79 | 65.0 | 4.76e-01 | 88.6% | 59.4% |
| 4eyyQ02 | 3.20.170.50 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › Dot/Icm secretion system IcmQ, C-terminal domain | 0.74 | 60.0 | 5.54e-01 | 87.5% | 86.0% |
| 2auaA01 | 3.20.170.10 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › ADP-ribosylation domain | 0.70 | 62.0 | 5.83e-01 | 98.9% | 93.5% |
| 1ab8A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 48.0 | 3.86e-01 | 100.0% | 99.4% |
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.51 | 32.0 | 3.65e-01 | 81.8% | 90.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3631884 | 237.1.1.36 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF7587 | 0.81 | 67.0 | 5.40e-01 | 88.6% | 98.8% |
| 3905755 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.79 | 67.0 | 5.83e-01 | 90.9% | 100.0% |
| 4995698 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.78 | 63.0 | 6.08e-01 | 86.4% | 100.0% |
| 3735675 | 237.1.1.36 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF7587 | 0.77 | 63.0 | 5.34e-01 | 88.6% | 99.3% |
| 3200918 | 237.1.1.36 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › DUF7587 | 0.76 | 63.0 | 4.56e-01 | 88.6% | 57.4% |
| 1005578 | 237.1.1.15 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Dot_icm_IcmQ | 0.74 | 63.0 | 5.44e-01 | 93.2% | 75.7% |
| 3295358 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.72 | 63.0 | 4.59e-01 | 96.6% | 62.9% |
| 3255679 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.66 | 56.0 | 4.24e-01 | 92.0% | 64.3% |
| 3412169 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 43.0 | 4.05e-01 | 90.9% | 65.7% |
| 3393815 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 45.0 | 3.32e-01 | 92.0% | 35.9% |
| 2770666 | 834.1.1.1 ↗ | a+b two layers › Photosystem I subunit PsaD › Photosystem I subunit PsaD › Photosystem I subunit PsaD › PsaD | 0.53 | 45.0 | 3.82e-01 | 100.0% | 57.3% |
| 4979327 | 1118.1.1.0 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain | 0.52 | 45.0 | 4.10e-01 | 100.0% | 79.2% |
| 5061515 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 32.0 | 3.03e-01 | 86.4% | 51.4% |
| 4935089 | 1118.1.1.1 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 | 0.51 | 44.0 | 4.01e-01 | 100.0% | 78.4% |
| 3715637 | 1118.1.1.0 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain | 0.51 | 43.0 | 3.30e-01 | 100.0% | 38.3% |
| 4944446 | 1118.1.1.0 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain | 0.51 | 44.0 | 3.79e-01 | 100.0% | 67.6% |
D2
high
residues 279-385
Domain cluster:
rep: js4906-29-5_S40_scaffold_13_prodigal-single.1__X__X__00046__D3-97
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wfxA02 | 3.20.170.30 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › | 0.80 | 63.0 | 6.87e-01 | 97.2% | 98.9% |
| 1bcpA00 | 3.90.210.10 | Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A | 0.69 | 64.0 | 4.94e-01 | 100.0% | 65.2% |
| 2cb4A00 | 3.90.210.10 | Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A | 0.69 | 64.0 | 4.74e-01 | 100.0% | 64.7% |
| 1f0lA01 | 3.90.175.10 | Alpha Beta › Alpha-Beta Complex › Diphtheria Toxin; domain 1 › Diphtheria Toxin, domain 1 | 0.68 | 62.0 | 5.11e-01 | 100.0% | 84.5% |
| 1gs0A02 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.65 | 58.0 | 4.60e-01 | 97.2% | 71.2% |
| 3h7oA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 30.0 | 3.04e-01 | 97.2% | 54.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4125268 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.82 | 63.0 | 6.82e-01 | 93.5% | 94.4% |
| 4303698 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.82 | 63.0 | 6.67e-01 | 94.4% | 90.4% |
| 4296568 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.80 | 63.0 | 6.63e-01 | 96.3% | 91.6% |
| 4994805 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.80 | 64.0 | 6.52e-01 | 97.2% | 86.4% |
| 3106804 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.78 | 64.0 | 6.50e-01 | 100.0% | 89.3% |
| 4016125 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.73 | 64.0 | 6.12e-01 | 97.2% | 83.3% |
| 3920549 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.72 | 61.0 | 5.17e-01 | 99.1% | 57.1% |
| 4880245 | 237.1.1.6 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › Diphtheria_C | 0.69 | 63.0 | 5.21e-01 | 100.0% | 84.9% |
| 3270835 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.68 | 61.0 | 4.73e-01 | 97.2% | 70.1% |
| 3324343 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.67 | 60.0 | 4.89e-01 | 97.2% | 63.7% |
| 3798872 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.67 | 60.0 | 4.63e-01 | 97.2% | 65.7% |
D3
medium
residues 27-167
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00086__D1-125
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18760.8 best | ART-PolyVal | 49.9 | 8.40e-13 | 56.0% | 47.9% |