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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00747
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00747
Identity
- Kingdom:
- phage
Quality
71.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 73-143
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.68 | 47.0 | 4.21e-01 | 100.0% | 51.0% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.54 | 35.0 | 4.03e-01 | 81.7% | 100.0% |
| 4ac9C04 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.52 | 39.0 | 3.82e-01 | 95.8% | 71.2% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 40.0 | 3.41e-01 | 100.0% | 48.9% |
| 4k15A00 | 2.60.40.3860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.32e-01 | 100.0% | 46.4% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 40.0 | 3.44e-01 | 88.7% | 69.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3733936 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.62 | 54.0 | 4.09e-01 | 100.0% | 75.6% |
| 3594386 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.58 | 41.0 | 3.82e-01 | 95.8% | 56.8% |
| 4329875 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.58 | 40.0 | 3.28e-01 | 71.8% | 84.0% |
| 3832396 | 375.1.1.134 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Cys_rich_CPXG | 0.57 | 48.0 | 4.67e-01 | 98.6% | 81.2% |
| 3340753 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 49.0 | 4.62e-01 | 100.0% | 77.6% |
| 3253467 | 4135.1.1.1 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like › CXXC_Zn-b_euk | 0.57 | 51.0 | 3.94e-01 | 100.0% | 49.7% |
| 3502102 | 4135.1.1.1 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like › CXXC_Zn-b_euk | 0.56 | 50.0 | 3.88e-01 | 100.0% | 50.6% |
| 5018703 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.56 | 47.0 | 4.38e-01 | 93.0% | 83.3% |
| 3176481 | 4135.1.1.1 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like › CXXC_Zn-b_euk | 0.56 | 49.0 | 3.71e-01 | 100.0% | 55.0% |
| 4020650 | 4135.1.1.1 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like › CXXC_Zn-b_euk | 0.55 | 49.0 | 3.74e-01 | 100.0% | 49.4% |
| 3442112 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 38.0 | 4.09e-01 | 95.8% | 96.4% |
| 3653569 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.53 | 38.0 | 4.09e-01 | 95.8% | 96.4% |
| 3500942 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.53 | 35.0 | 3.10e-01 | 100.0% | 44.5% |
| 4971344 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 30.0 | 3.31e-01 | 93.0% | 72.0% |
| 3220241 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 36.0 | 2.38e-01 | 76.1% | 28.1% |
| 3565994 | 5.1.4.137 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nbas_N | 0.51 | 43.0 | 2.64e-01 | 97.2% | 76.0% |