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RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00777
Bact-VirRifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00777
Identity
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-80
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bkwA02 | 3.30.1360.220 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Domain of unknown function (DUF3480), N-terminal subdomain | 0.68 | 49.0 | 4.53e-01 | 96.1% | 59.0% |
| 1knyA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 54.0 | 4.55e-01 | 87.0% | 57.6% |
| 1o22A00 | 3.90.1000.10 | Alpha Beta › Alpha-Beta Complex › Orphan Protein Tm0875; Chain: A; › Hypothetical protein TM0875 | 0.64 | 54.0 | 4.35e-01 | 93.5% | 89.9% |
| 6j7xA01 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.62 | 45.0 | 3.07e-01 | 76.6% | 27.3% |
| 4bl8B03 | 3.30.1360.230 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Sufu, C-terminal domain | 0.60 | 51.0 | 4.31e-01 | 97.4% | 56.1% |
| 1s5jA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 45.0 | 3.44e-01 | 83.1% | 60.8% |
| 4g1iA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 34.0 | 3.65e-01 | 81.8% | 65.2% |
| 1z05A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 50.0 | 4.07e-01 | 100.0% | 87.7% |
| 4kmaA02 | 3.30.1360.230 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Sufu, C-terminal domain | 0.57 | 49.0 | 4.30e-01 | 97.4% | 68.9% |
| 4dg8A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.56 | 45.0 | 4.24e-01 | 97.4% | 72.8% |
| 7r7eA01 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.55 | 47.0 | 4.12e-01 | 96.1% | 71.4% |
| 3kxwA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.54 | 46.0 | 3.95e-01 | 96.1% | 67.7% |
| 1i74A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.53 | 46.0 | 4.03e-01 | 97.4% | 97.5% |
| 4fgmA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.53 | 46.0 | 3.15e-01 | 97.4% | 57.8% |
| 3p9dD02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.53 | 38.0 | 3.50e-01 | 87.0% | 57.1% |
| 2zw9B01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 41.0 | 2.71e-01 | 84.4% | 94.3% |
| 4i1sB00 | 4.10.80.340 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.52 | 25.0 | 2.90e-01 | 90.9% | 59.6% |
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 44.0 | 3.79e-01 | 92.2% | 76.7% |
| 2v7bA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 42.0 | 3.93e-01 | 88.3% | 76.3% |
| 1n6zA00 | 3.10.20.250 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like | 0.52 | 38.0 | 3.52e-01 | 80.5% | 99.0% |
| 6o6eB02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 46.0 | 4.13e-01 | 100.0% | 75.7% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.51 | 45.0 | 3.79e-01 | 100.0% | 87.5% |
| 3bamA00 | 3.40.91.20 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.51 | 40.0 | 2.98e-01 | 84.4% | 67.0% |
| 6mvsA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.51 | 41.0 | 3.07e-01 | 88.3% | 64.4% |
| 6ks6Z02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.51 | 37.0 | 3.38e-01 | 85.7% | 56.1% |
| 2qy6A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 41.0 | 2.97e-01 | 89.6% | 80.9% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 40.0 | 3.11e-01 | 89.6% | 66.3% |
| 3tghA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 41.0 | 2.81e-01 | 93.5% | 87.0% |
| 4dh4A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.50 | 32.0 | 2.84e-01 | 87.0% | 44.7% |
| 6n36A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 36.0 | 2.50e-01 | 75.3% | 82.6% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068720 | 306.4.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › YggU-like › YggU-like | 0.68 | 40.0 | 4.24e-01 | 87.0% | 65.7% |
| 3363058 | 5.1.8.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 | 0.67 | 51.0 | 3.62e-01 | 80.5% | 53.8% |
| 3956851 | 3785.1.1.0 ↗ | a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain | 0.66 | 58.0 | 5.06e-01 | 98.7% | 64.3% |
| 3957469 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.65 | 44.0 | 3.60e-01 | 94.8% | 36.0% |
| 4955188 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.65 | 50.0 | 4.67e-01 | 89.6% | 67.4% |
| 3593932 | 2484.3.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain | 0.64 | 41.0 | 3.20e-01 | 89.6% | 31.2% |
| 5027413 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.63 | 51.0 | 4.29e-01 | 85.7% | 63.2% |
| 4451827 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 44.0 | 3.56e-01 | 90.9% | 40.0% |
| 3503356 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.61 | 45.0 | 4.23e-01 | 97.4% | 63.2% |
| 3881318 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.61 | 44.0 | 3.60e-01 | 93.5% | 40.7% |
| 3232140 | 3785.1.1.1 ↗ | a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › SARA_C | 0.61 | 52.0 | 4.26e-01 | 96.1% | 69.7% |
| 3279249 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.60 | 50.0 | 4.28e-01 | 90.9% | 64.0% |
| 3469970 | 3785.1.1.0 ↗ | a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain | 0.60 | 52.0 | 4.22e-01 | 96.1% | 62.1% |
| 4939507 | 316.1.1.54 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RlaP | 0.60 | 48.0 | 4.43e-01 | 88.3% | 77.0% |
| 3788032 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 41.0 | 2.99e-01 | 72.7% | 42.1% |
| 5045164 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.59 | 47.0 | 4.07e-01 | 87.0% | 62.5% |
| 5018719 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.59 | 44.0 | 3.45e-01 | 97.4% | 36.5% |
| 3176188 | 109.4.1.3157 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29173, PF29174, PF29177 | 0.58 | 43.0 | 2.71e-01 | 76.6% | 20.5% |
| 3495305 | 3785.1.1.1 ↗ | a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › SARA_C | 0.57 | 50.0 | 4.11e-01 | 98.7% | 61.3% |
| 5016077 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.56 | 44.0 | 3.75e-01 | 87.0% | 88.4% |
| 4026339 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.56 | 47.0 | 3.79e-01 | 92.2% | 91.9% |
| 3880343 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.55 | 48.0 | 3.90e-01 | 96.1% | 58.6% |
| 4031517 | 872.4.1.0 ↗ | a+b two layers › Dodecin subunit-like › YdgH-like › YdgH-like | 0.55 | 35.0 | 3.09e-01 | 85.7% | 41.7% |
| 4622549 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.55 | 50.0 | 4.23e-01 | 100.0% | 76.8% |
| 3277889 | 327.5.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-dom_DIP2-like | 0.55 | 47.0 | 4.13e-01 | 96.1% | 74.8% |
| 3582701 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.54 | 49.0 | 4.33e-01 | 100.0% | 71.8% |
| 3969404 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.54 | 48.0 | 4.03e-01 | 98.7% | 79.2% |
| 4981292 | 7584.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins | 0.54 | 47.0 | 3.03e-01 | 98.7% | 26.4% |
| 3966350 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.54 | 46.0 | 4.20e-01 | 100.0% | 70.5% |
| 4125352 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.54 | 49.0 | 4.06e-01 | 100.0% | 76.9% |
| 3219454 | 2484.1.1.190 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 | 0.53 | 40.0 | 2.89e-01 | 83.1% | 27.6% |
| 3867661 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 45.0 | 2.85e-01 | 94.8% | 20.2% |
| 5061175 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.53 | 40.0 | 3.21e-01 | 84.4% | 59.4% |
| 4525647 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.53 | 47.0 | 4.01e-01 | 100.0% | 74.4% |
| 3743726 | 327.5.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › Mug62 | 0.53 | 44.0 | 3.66e-01 | 96.1% | 69.0% |
| 3290102 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.52 | 45.0 | 3.93e-01 | 96.1% | 70.8% |
| 4980396 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.51 | 38.0 | 2.96e-01 | 81.8% | 74.2% |
| None | — | 0.51 | 44.0 | 3.64e-01 | 98.7% | 91.7% | |
| 5001550 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.51 | 44.0 | 3.68e-01 | 100.0% | 65.0% |
| 4929397 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.51 | 41.0 | 3.55e-01 | 93.5% | 85.4% |
| 4106936 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.50 | 44.0 | 4.07e-01 | 100.0% | 78.0% |
| 3516783 | 2003.1.2.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO,FAO_M | 0.50 | 42.0 | 2.97e-01 | 97.4% | 81.1% |
| 5016073 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.50 | 38.0 | 2.96e-01 | 84.4% | 56.8% |
| 5064219 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.50 | 38.0 | 2.75e-01 | 84.4% | 76.8% |