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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00004
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00004
Identity
- Kingdom:
- phage
Quality
71.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ti2B01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 49.0 | 3.76e-01 | 76.8% | 97.0% |
| 3hluA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 49.0 | 4.52e-01 | 78.6% | 100.0% |
| 1c9fA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.67 | 52.0 | 4.53e-01 | 85.7% | 75.9% |
| 4q7qB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.66 | 45.0 | 2.93e-01 | 71.4% | 58.4% |
| 1h0hB01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 3.25e-01 | 75.0% | 88.7% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.61 | 47.0 | 4.06e-01 | 89.3% | 60.4% |
| 8h68A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.61 | 50.0 | 3.44e-01 | 96.4% | 62.7% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.58 | 45.0 | 3.95e-01 | 91.1% | 85.3% |
| 1kt0A02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 48.0 | 3.97e-01 | 100.0% | 79.8% |
| 3a5yA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 40.0 | 2.55e-01 | 73.2% | 48.5% |
| 4p04A01 | 2.60.40.3100 | Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain | 0.57 | 44.0 | 3.76e-01 | 92.9% | 70.8% |
| 6eudA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 39.0 | 2.82e-01 | 71.4% | 90.0% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.56 | 38.0 | 3.57e-01 | 75.0% | 53.9% |
| 3nroA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.56 | 46.0 | 3.14e-01 | 98.2% | 31.9% |
| 6zwwC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 38.0 | 2.77e-01 | 71.4% | 89.6% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 38.0 | 2.49e-01 | 75.0% | 52.6% |
| 1wfuA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 41.0 | 3.59e-01 | 89.3% | 75.8% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.54 | 42.0 | 2.94e-01 | 94.6% | 46.0% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 3.92e-01 | 94.6% | 79.5% |
| 2xauA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 36.0 | 2.65e-01 | 71.4% | 88.5% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.54 | 46.0 | 3.74e-01 | 98.2% | 66.1% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.54 | 44.0 | 4.29e-01 | 92.9% | 92.1% |
| 2dbjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.54e-01 | 92.9% | 79.8% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 41.0 | 3.07e-01 | 94.6% | 90.6% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 42.0 | 3.36e-01 | 96.4% | 67.4% |
| 3rhtA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.52 | 40.0 | 2.79e-01 | 94.6% | 98.8% |
| 4obmA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.51 | 42.0 | 2.81e-01 | 98.2% | 61.2% |
| 5jm6A02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.51 | 40.0 | 3.15e-01 | 94.6% | 83.2% |
| 1qxfA00 | 2.20.25.100 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 | 0.50 | 38.0 | 3.82e-01 | 85.7% | 91.4% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.50 | 39.0 | 3.17e-01 | 100.0% | 68.5% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060834 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.74 | 53.0 | 5.27e-01 | 78.6% | 85.0% |
| 3555707 | 221.1.1.10 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CIDE-N | 0.66 | 48.0 | 4.31e-01 | 82.1% | 75.3% |
| 3928432 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.65 | 47.0 | 4.05e-01 | 82.1% | 82.0% |
| 4988260 | 268.2.1.0 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes | 0.63 | 51.0 | 3.58e-01 | 100.0% | 87.0% |
| 5052958 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.62 | 47.0 | 4.27e-01 | 89.3% | 60.0% |
| 1003912 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.61 | 47.0 | 4.06e-01 | 89.3% | 60.4% |
| 3403464 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.60 | 46.0 | 4.57e-01 | 87.5% | 88.3% |
| 3935631 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.60 | 43.0 | 3.48e-01 | 78.6% | 41.7% |
| 5049794 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.58 | 42.0 | 3.23e-01 | 80.4% | 36.6% |
| 3730501 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 40.0 | 4.29e-01 | 73.2% | 95.6% |
| 3690527 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 40.0 | 3.45e-01 | 73.2% | 67.4% |
| 3850966 | 3346.1.1.1 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N | 0.57 | 41.0 | 2.74e-01 | 78.6% | 22.8% |
| 3705090 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 46.0 | 3.88e-01 | 96.4% | 53.0% |
| None | — | 0.56 | 43.0 | 2.89e-01 | 89.3% | 91.6% | |
| 4085794 | 226.1.1.6 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › SANBR_BTB | 0.56 | 39.0 | 2.75e-01 | 73.2% | 51.4% |
| 3274193 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 42.0 | 2.36e-01 | 89.3% | 25.6% |
| 3590928 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 39.0 | 3.84e-01 | 80.4% | 69.2% |
| 3273838 | 2006.1.1.35 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Pex22_HAD-like | 0.54 | 37.0 | 2.85e-01 | 71.4% | 40.7% |
| 3784386 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.53 | 31.0 | 3.34e-01 | 89.3% | 68.9% |
| 3797551 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.53 | 42.0 | 2.80e-01 | 96.4% | 52.8% |
| 5061415 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.53 | 43.0 | 3.19e-01 | 100.0% | 46.3% |
| 3481585 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 38.0 | 3.36e-01 | 80.4% | 94.4% |
| 3401129 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.52 | 41.0 | 2.82e-01 | 92.9% | 34.5% |
| 4022609 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.52 | 42.0 | 3.30e-01 | 100.0% | 59.4% |
| 3518700 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.51 | 42.0 | 2.98e-01 | 100.0% | 32.4% |
| 3447963 | 375.3.1.0 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger | 0.51 | 37.0 | 3.56e-01 | 80.4% | 67.7% |
| 3594086 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.50 | 35.0 | 2.34e-01 | 75.0% | 100.0% |