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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00005
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00005
Identity
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-98
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lq0A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.71 | 60.0 | 5.19e-01 | 92.6% | 90.5% |
| 4z1xA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.70 | 60.0 | 5.27e-01 | 93.7% | 90.2% |
| 2ab5A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.66 | 54.0 | 4.85e-01 | 88.4% | 74.6% |
| 1vx7G00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.63 | 49.0 | 4.48e-01 | 86.3% | 63.7% |
| 6gmhC01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.62 | 44.0 | 3.94e-01 | 74.7% | 85.6% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.61 | 40.0 | 4.59e-01 | 84.2% | 94.1% |
| 6d9mA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 47.0 | 4.11e-01 | 87.4% | 90.7% |
| 3hvwA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 47.0 | 4.06e-01 | 88.4% | 88.1% |
| 2f1fA02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.59 | 37.0 | 4.03e-01 | 85.3% | 76.9% |
| 2cw8A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 52.0 | 4.29e-01 | 100.0% | 59.2% |
| 3aawA02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.57 | 51.0 | 4.22e-01 | 97.9% | 94.5% |
| 1jqgA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.56 | 41.0 | 4.17e-01 | 78.9% | 78.0% |
| 3h6eA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 46.0 | 3.52e-01 | 90.5% | 82.6% |
| 3qtaB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.55 | 37.0 | 2.98e-01 | 70.5% | 85.9% |
| 1qexA03 | 2.60.40.1680 | Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like | 0.54 | 38.0 | 3.58e-01 | 88.4% | 61.4% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.53 | 40.0 | 3.41e-01 | 82.1% | 92.8% |
| 1gpeA03 | 3.30.560.10 | Alpha Beta › 2-Layer Sandwich › Glucose Oxidase; domain 3 › Glucose Oxidase, domain 3 | 0.53 | 39.0 | 2.79e-01 | 77.9% | 56.0% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.52 | 37.0 | 3.15e-01 | 72.6% | 83.6% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 43.0 | 3.23e-01 | 90.5% | 80.4% |
| 2x1cB01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.52 | 44.0 | 3.22e-01 | 95.8% | 53.2% |
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.51 | 43.0 | 3.29e-01 | 88.4% | 89.4% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.51 | 41.0 | 3.85e-01 | 87.4% | 88.1% |
| 2c9jA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 43.0 | 3.48e-01 | 98.9% | 84.5% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.51 | 42.0 | 3.36e-01 | 92.6% | 71.8% |
| 1h4uA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 44.0 | 3.36e-01 | 100.0% | 46.5% |
| 2imhA01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 42.0 | 3.36e-01 | 95.8% | 73.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4536899 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.69 | 55.0 | 4.80e-01 | 86.3% | 95.2% |
| 5015409 | 327.11.2.83 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DUF2096_C | 0.69 | 40.0 | 4.98e-01 | 81.1% | 100.0% |
| 3251998 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.68 | 53.0 | 5.18e-01 | 84.2% | 81.0% |
| 3177415 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.67 | 52.0 | 4.99e-01 | 84.2% | 78.2% |
| 3562570 | 306.10.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 | 0.66 | 59.0 | 5.20e-01 | 98.9% | 98.6% |
| 3206671 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.65 | 54.0 | 4.88e-01 | 91.6% | 93.1% |
| 3580171 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.62 | 47.0 | 4.72e-01 | 98.9% | 80.0% |
| 3649484 | 220.1.1.27 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD | 0.60 | 49.0 | 4.12e-01 | 97.9% | 52.5% |
| 3987638 | 304.48.1.49 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP | 0.59 | 45.0 | 3.96e-01 | 83.2% | 94.0% |
| 3599877 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.58 | 46.0 | 3.61e-01 | 87.4% | 49.1% |
| 4314745 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.58 | 39.0 | 4.36e-01 | 77.9% | 94.3% |
| 4961458 | 304.165.1.0 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 | 0.57 | 51.0 | 4.39e-01 | 100.0% | 64.0% |
| 4352090 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.57 | 45.0 | 3.63e-01 | 100.0% | 43.8% |
| 3640508 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.56 | 46.0 | 3.36e-01 | 91.6% | 85.1% |
| 3665218 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.56 | 52.0 | 4.58e-01 | 100.0% | 87.4% |
| 5009942 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.56 | 41.0 | 4.10e-01 | 76.8% | 95.8% |
| 4540273 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.55 | 47.0 | 3.57e-01 | 96.8% | 50.2% |
| 3885877 | 11.1.6.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND | 0.55 | 45.0 | 4.11e-01 | 89.5% | 92.3% |
| 5035705 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.55 | 40.0 | 4.17e-01 | 75.8% | 90.6% |
| 3309918 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.54 | 48.0 | 4.33e-01 | 94.7% | 79.2% |
| 4946101 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 46.0 | 4.54e-01 | 100.0% | 87.6% |
| 3252048 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.54 | 44.0 | 3.96e-01 | 89.5% | 98.5% |
| 4630601 | 210.1.2.7 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › NAAA-beta | 0.54 | 45.0 | 3.18e-01 | 94.7% | 51.7% |
| 441034 | 3386.1.1.4 ↗ | beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related › T4_gp9_10_C | 0.53 | 38.0 | 3.55e-01 | 88.4% | 59.2% |
| 3339524 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.53 | 37.0 | 3.61e-01 | 72.6% | 84.8% |
| 5053873 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.52 | 47.0 | 4.55e-01 | 100.0% | 88.6% |
| 3556340 | 210.1.2.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH,NAAA-beta | 0.51 | 43.0 | 3.07e-01 | 96.8% | 52.3% |
| 4198379 | 220.1.1.162 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 | 0.51 | 42.0 | 3.61e-01 | 93.7% | 60.0% |
| 3588817 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 44.0 | 4.16e-01 | 98.9% | 80.0% |
| 2392895 | 210.1.2.7 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › NAAA-beta | 0.51 | 42.0 | 3.01e-01 | 95.8% | 51.8% |
| 3712697 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.50 | 41.0 | 3.50e-01 | 87.4% | 82.0% |
| 3935297 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.50 | 42.0 | 2.94e-01 | 94.7% | 51.9% |