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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00063
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00063
Identity
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-76
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7yq0B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 43.0 | 3.34e-01 | 71.1% | 30.1% |
| 3pvlA01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.66 | 46.0 | 3.39e-01 | 73.7% | 48.1% |
| 1miuA04 | 6.10.70.10 | Special › Helix non-globular › Topoisomerase I; Chain A, domain 4 › | 0.62 | 46.0 | 3.87e-01 | 85.5% | 48.4% |
| 2cwqA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.61 | 51.0 | 4.34e-01 | 92.1% | 90.5% |
| 1wmwB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 48.0 | 3.17e-01 | 85.5% | 50.2% |
| 3fhnA05 | 1.10.10.2270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Dsl1p vesicle tethering complex, Tip20p subunit, domain E | 0.58 | 40.0 | 4.27e-01 | 72.4% | 100.0% |
| 2iw5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 3.61e-01 | 72.4% | 56.9% |
| 3itfA00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 40.0 | 3.54e-01 | 73.7% | 91.0% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.54 | 40.0 | 3.72e-01 | 77.6% | 72.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951588 | 4163.1.2.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like | 0.67 | 53.0 | 4.45e-01 | 85.5% | 87.7% |
| 4207224 | 4048.1.1.1 ↗ | alpha bundles › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Second alpha-helical domain in heme-dependent catalases › Catalase-rel | 0.61 | 45.0 | 4.35e-01 | 78.9% | 75.3% |
| 3719550 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.61 | 53.0 | 3.27e-01 | 98.7% | 35.5% |
| 3785168 | 7094.1.1.2 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 | 0.60 | 42.0 | 3.86e-01 | 73.7% | 57.0% |
| 3350068 | 633.22.1.1 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › VKOR | 0.59 | 43.0 | 3.41e-01 | 77.6% | 48.5% |
| 3580280 | 604.1.1.192 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26998 | 0.57 | 39.0 | 3.65e-01 | 71.1% | 90.5% |
| 3227171 | 207.1.1.104 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_Zer-1 | 0.57 | 40.0 | 2.77e-01 | 76.3% | 29.0% |
| 3234 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.56 | 50.0 | 4.35e-01 | 100.0% | 94.0% |
| 3300208 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 38.0 | 3.34e-01 | 72.4% | 47.8% |