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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00066
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00066
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-72
Domain cluster:
rep: KT630649.1__ALF02524.1__SEN34_49__00049__D91-151
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04448.18 best | DUF551 | 34.8 | 3.30e-08 | 94.3% | 86.8% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 52.0 | 5.38e-01 | 100.0% | 89.1% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 48.0 | 5.14e-01 | 84.3% | 90.0% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.66 | 50.0 | 4.30e-01 | 100.0% | 51.3% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.65 | 43.0 | 4.91e-01 | 81.4% | 92.3% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 46.0 | 4.86e-01 | 85.7% | 85.7% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.64 | 49.0 | 5.24e-01 | 88.6% | 100.0% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 37.0 | 4.06e-01 | 71.4% | 71.9% |
| 4f88102 | 3.90.1720.60 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.63 | 52.0 | 3.83e-01 | 98.6% | 48.4% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 51.0 | 5.04e-01 | 98.6% | 84.9% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 47.0 | 5.14e-01 | 94.3% | 100.0% |
| 3e1sA04 | 2.30.30.940 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 48.0 | 4.92e-01 | 88.6% | 89.9% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 53.0 | 4.16e-01 | 95.7% | 47.7% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.85e-01 | 82.9% | 100.0% |
| 2kr0A01 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.61 | 46.0 | 3.93e-01 | 81.4% | 79.6% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 45.0 | 4.01e-01 | 82.9% | 82.9% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.60 | 44.0 | 3.56e-01 | 78.6% | 82.7% |
| 1ne8A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 46.0 | 3.97e-01 | 85.7% | 80.2% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 44.0 | 4.68e-01 | 80.0% | 93.5% |
| 2hx0A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.59 | 50.0 | 4.12e-01 | 97.1% | 69.7% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 51.0 | 4.56e-01 | 100.0% | 72.5% |
| 5nslA02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.59 | 49.0 | 3.70e-01 | 98.6% | 77.0% |
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 41.0 | 4.36e-01 | 78.6% | 100.0% |
| 1pg5B02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.56 | 39.0 | 4.17e-01 | 74.3% | 96.5% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 45.0 | 4.41e-01 | 92.9% | 98.7% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 46.0 | 4.18e-01 | 90.0% | 78.7% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 41.0 | 3.52e-01 | 82.9% | 100.0% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.55 | 41.0 | 4.25e-01 | 81.4% | 98.4% |
| 1vx4404 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 43.0 | 3.59e-01 | 91.4% | 69.3% |
| 3cp7B02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 44.0 | 3.93e-01 | 95.7% | 61.0% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 4.07e-01 | 91.4% | 84.6% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 40.0 | 3.66e-01 | 78.6% | 73.4% |
| 2gs5A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.55 | 45.0 | 3.41e-01 | 95.7% | 95.7% |
| 2m5sA00 | 2.40.30.240 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 45.0 | 3.88e-01 | 100.0% | 99.2% |
| 1mrzB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.54 | 44.0 | 3.82e-01 | 92.9% | 95.5% |
| 1wczA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 42.0 | 3.67e-01 | 90.0% | 53.9% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 38.0 | 3.53e-01 | 80.0% | 96.8% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 44.0 | 2.87e-01 | 98.6% | 68.3% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.51 | 39.0 | 3.34e-01 | 87.1% | 77.6% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 40.0 | 4.02e-01 | 92.9% | 100.0% |
| 3unpA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 42.0 | 3.16e-01 | 97.1% | 86.5% |
| 3asiA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 42.0 | 3.27e-01 | 100.0% | 84.8% |
| 2ec1A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 35.0 | 3.10e-01 | 77.1% | 84.7% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4251101 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 60.0 | 5.69e-01 | 98.6% | 92.9% |
| 3414063 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.69 | 51.0 | 5.61e-01 | 81.4% | 100.0% |
| 4271087 | 4.1.1.444 ↗ | beta barrels › SH3 › SH3 › SH3 › SplA | 0.67 | 51.0 | 5.15e-01 | 81.4% | 82.9% |
| 3470912 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.67 | 51.0 | 4.29e-01 | 81.4% | 79.2% |
| 3263955 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.67 | 51.0 | 4.17e-01 | 81.4% | 68.2% |
| 3932484 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 52.0 | 5.42e-01 | 84.3% | 100.0% |
| 3609256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 54.0 | 5.07e-01 | 88.6% | 83.5% |
| 3929373 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.66 | 51.0 | 5.50e-01 | 84.3% | 100.0% |
| 5010031 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.66 | 57.0 | 4.90e-01 | 100.0% | 76.5% |
| 4484974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 54.0 | 5.16e-01 | 94.3% | 89.4% |
| 3941170 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.65 | 51.0 | 5.12e-01 | 85.7% | 92.9% |
| 3662319 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.65 | 53.0 | 5.11e-01 | 90.0% | 92.5% |
| 4028731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 55.0 | 5.67e-01 | 92.9% | 100.0% |
| 3807651 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.64 | 51.0 | 4.41e-01 | 87.1% | 92.7% |
| 4022025 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.64 | 53.0 | 4.22e-01 | 92.9% | 91.0% |
| 3400906 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 47.0 | 4.13e-01 | 81.4% | 81.9% |
| 3240407 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.62 | 50.0 | 5.06e-01 | 90.0% | 94.3% |
| 3459099 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.62 | 50.0 | 4.36e-01 | 87.1% | 74.3% |
| 3185321 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.62 | 53.0 | 5.17e-01 | 92.9% | 94.7% |
| 3299156 | 6.1.1.2 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume | 0.62 | 52.0 | 3.85e-01 | 94.3% | 96.8% |
| 3591144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.62 | 52.0 | 4.11e-01 | 94.3% | 68.7% |
| 3841414 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.62 | 53.0 | 5.37e-01 | 98.6% | 95.7% |
| 3930366 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 47.0 | 5.02e-01 | 84.3% | 100.0% |
| 3494307 | 4.1.1.34 ↗ | beta barrels › SH3 › SH3 › SH3 › MBT | 0.61 | 49.0 | 4.10e-01 | 88.6% | 53.6% |
| 3672735 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.61 | 49.0 | 5.02e-01 | 87.1% | 95.4% |
| 4598590 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.61 | 48.0 | 4.86e-01 | 87.1% | 90.0% |
| 4024274 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.61 | 49.0 | 4.36e-01 | 91.4% | 71.4% |
| 3926179 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 47.0 | 4.86e-01 | 85.7% | 100.0% |
| 3924375 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.61 | 50.0 | 4.93e-01 | 92.9% | 90.7% |
| 3940362 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 48.0 | 3.39e-01 | 88.6% | 28.4% |
| 3515762 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.60 | 48.0 | 4.70e-01 | 87.1% | 89.3% |
| 3934126 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 46.0 | 4.88e-01 | 84.3% | 100.0% |
| 3933892 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 45.0 | 4.80e-01 | 81.4% | 100.0% |
| 3494683 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 49.0 | 4.99e-01 | 91.4% | 95.7% |
| 3504834 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 45.0 | 4.77e-01 | 84.3% | 98.3% |
| 3933788 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 46.0 | 4.84e-01 | 87.1% | 100.0% |
| 3437523 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.60 | 47.0 | 4.75e-01 | 87.1% | 91.4% |
| 3933539 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 48.0 | 5.00e-01 | 92.9% | 98.5% |
| 3631731 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 51.0 | 4.09e-01 | 100.0% | 70.7% |
| 4987744 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.60 | 51.0 | 4.21e-01 | 100.0% | 57.0% |
| 3620924 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.59 | 46.0 | 4.39e-01 | 84.3% | 95.2% |
| 4210485 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.59 | 46.0 | 4.77e-01 | 87.1% | 93.8% |
| 3937299 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 45.0 | 4.14e-01 | 81.4% | 66.7% |
| 3934192 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 45.0 | 4.77e-01 | 82.9% | 100.0% |
| 3448216 | 4.1.1.421 ↗ | beta barrels › SH3 › SH3 › SH3 › ARF_AD | 0.59 | 45.0 | 4.55e-01 | 85.7% | 100.0% |
| 3928136 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 45.0 | 4.80e-01 | 84.3% | 100.0% |
| 3854638 | 4.1.1.131 ↗ | beta barrels › SH3 › SH3 › SH3 › MLVIN_C | 0.59 | 44.0 | 4.01e-01 | 88.6% | 58.0% |
| 3277206 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 49.0 | 4.76e-01 | 95.7% | 89.7% |
| 3930643 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 44.0 | 4.68e-01 | 87.1% | 100.0% |
| 3619619 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 47.0 | 4.75e-01 | 94.3% | 90.0% |
| 4024240 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 50.0 | 4.80e-01 | 97.1% | 87.5% |
| 4319097 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.44e-01 | 82.9% | 94.8% |
| 3519861 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 44.0 | 4.72e-01 | 85.7% | 98.3% |
| 3678872 | 4.1.1.239 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O | 0.57 | 45.0 | 4.45e-01 | 87.1% | 98.7% |
| 1503651 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.56 | 45.0 | 4.39e-01 | 97.1% | 78.8% |
| 4010630 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.56 | 48.0 | 3.02e-01 | 100.0% | 19.1% |
| 3473808 | 2498.1.1.14 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 | 0.56 | 46.0 | 2.90e-01 | 92.9% | 58.2% |
| 3966602 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 40.0 | 3.43e-01 | 77.1% | 54.2% |
| 3595387 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 2.82e-01 | 70.0% | 73.5% |
| 1851176 | 5092.1.1.0 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins | 0.55 | 48.0 | 3.91e-01 | 98.6% | 71.3% |
| 3957568 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 44.0 | 3.98e-01 | 90.0% | 88.9% |
| 3981111 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.54 | 46.0 | 3.69e-01 | 100.0% | 68.4% |
| 5040907 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.54 | 44.0 | 3.20e-01 | 95.7% | 29.6% |
| 3970526 | 234.3.1.2 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain › Colicin_E5 | 0.54 | 39.0 | 3.62e-01 | 77.1% | 68.9% |
| 3220497 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.53 | 43.0 | 3.19e-01 | 95.7% | 76.8% |
| 4085589 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.52 | 43.0 | 4.15e-01 | 94.3% | 98.8% |
| 4854964 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.52 | 43.0 | 4.06e-01 | 95.7% | 89.5% |
| 3197517 | 219.1.1.129 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 | 0.51 | 37.0 | 3.24e-01 | 80.0% | 88.1% |
| 3415428 | 1.1.7.69 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel | 0.51 | 41.0 | 3.73e-01 | 95.7% | 90.5% |