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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00086
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00086
Identity
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-57
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qenA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 35.0 | 3.32e-01 | 71.9% | 42.9% |
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 41.0 | 3.61e-01 | 78.9% | 49.4% |
| 2oc5A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 41.0 | 2.78e-01 | 89.5% | 19.5% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 33.0 | 3.19e-01 | 98.2% | 47.0% |
| 3ez0C00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 41.0 | 2.95e-01 | 86.0% | 46.6% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.55 | 45.0 | 3.83e-01 | 93.0% | 82.5% |
| 2fj0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 45.0 | 2.66e-01 | 100.0% | 22.3% |
| 1gc5A02 | 3.30.1110.20 | Alpha Beta › 2-Layer Sandwich › Adenosine kinase, small domain › | 0.51 | 40.0 | 3.31e-01 | 86.0% | 69.8% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.51 | 42.0 | 3.47e-01 | 100.0% | 78.4% |
| 3ejjB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 38.0 | 2.95e-01 | 86.0% | 78.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992011 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 44.0 | 4.32e-01 | 82.5% | 51.7% |
| 4631230 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.66 | 50.0 | 3.26e-01 | 86.0% | 29.7% |
| 5074539 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 38.0 | 3.57e-01 | 82.5% | 47.1% |
| 3236431 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 42.0 | 4.00e-01 | 96.5% | 55.7% |
| 3277622 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.59 | 50.0 | 3.07e-01 | 100.0% | 57.0% |
| 3870171 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.59 | 41.0 | 3.87e-01 | 73.7% | 78.6% |
| 3482901 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.57 | 32.0 | 2.94e-01 | 78.9% | 38.7% |
| None | — | 0.56 | 36.0 | 3.71e-01 | 100.0% | 68.5% | |
| 3536346 | 109.4.1.910 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_MROH2B_C | 0.56 | 42.0 | 2.89e-01 | 86.0% | 28.1% |
| 3932596 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.56 | 44.0 | 2.96e-01 | 87.7% | 68.5% |