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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00110
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00110
Identity
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-128
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00636__D44-131
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 44.0 | 4.91e-01 | 95.7% | 85.1% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.59 | 46.0 | 4.43e-01 | 88.3% | 72.5% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 36.0 | 3.84e-01 | 72.3% | 74.7% |
| 2xu8A00 | 3.90.70.190 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) | 0.55 | 42.0 | 3.92e-01 | 80.9% | 66.4% |
| 2m1hA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 47.0 | 4.46e-01 | 94.7% | 82.7% |
| 3htnB00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.52 | 36.0 | 3.17e-01 | 71.3% | 56.8% |
| 1dtdB00 | 3.30.1040.10 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › Carboxypeptidase inhibitor | 0.51 | 32.0 | 3.84e-01 | 86.2% | 100.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020073 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 46.0 | 5.22e-01 | 91.5% | 90.0% |
| 3999480 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.69 | 50.0 | 5.28e-01 | 91.5% | 83.5% |
| 3853598 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.67 | 50.0 | 5.41e-01 | 89.4% | 92.5% |
| 3645842 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.67 | 51.0 | 5.43e-01 | 81.9% | 95.0% |
| 3846130 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.66 | 51.0 | 3.95e-01 | 92.6% | 37.6% |
| 3257650 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 51.0 | 5.41e-01 | 81.9% | 98.8% |
| 3902990 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.66 | 51.0 | 5.22e-01 | 92.6% | 85.6% |
| 4380562 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.64 | 50.0 | 3.86e-01 | 83.0% | 63.0% |
| 3494858 | 109.4.1.816 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RALGAPB_N | 0.62 | 55.0 | 3.13e-01 | 98.9% | 13.3% |
| 3589730 | 4.1.1.252 ↗ | beta barrels › SH3 › SH3 › SH3 › MdcG_N | 0.62 | 48.0 | 5.17e-01 | 97.9% | 96.2% |
| 3876669 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.60 | 44.0 | 4.12e-01 | 76.6% | 93.0% |
| 3605448 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.60 | 41.0 | 2.74e-01 | 71.3% | 88.5% |
| 3476615 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 41.0 | 4.43e-01 | 71.3% | 92.5% |
| 4110324 | 4.1.1.252 ↗ | beta barrels › SH3 › SH3 › SH3 › MdcG_N | 0.60 | 47.0 | 5.09e-01 | 97.9% | 97.5% |
| 5001586 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 39.0 | 4.00e-01 | 98.9% | 68.9% |
| 3607307 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.59 | 41.0 | 4.67e-01 | 97.9% | 97.1% |
| 3171604 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 43.0 | 4.76e-01 | 96.8% | 96.0% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.58 | 42.0 | 4.32e-01 | 91.5% | 78.9% |
| 3498829 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 51.0 | 3.26e-01 | 100.0% | 23.8% |
| 3782292 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.58 | 41.0 | 4.43e-01 | 73.4% | 92.5% |
| 3519380 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.58 | 43.0 | 4.66e-01 | 97.9% | 92.5% |
| 3213215 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 51.0 | 4.76e-01 | 98.9% | 82.6% |
| 3499855 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 39.0 | 4.32e-01 | 98.9% | 93.3% |
| 5078822 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.55 | 37.0 | 3.52e-01 | 70.2% | 77.4% |
| 3390533 | 4.8.1.19 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › WAC_Acf1_DNA_bd | 0.54 | 41.0 | 3.44e-01 | 100.0% | 47.5% |
| 3397710 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.53 | 36.0 | 2.68e-01 | 70.2% | 27.3% |
| 4207502 | 274.1.1.38 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pecanex_C | 0.53 | 42.0 | 3.31e-01 | 85.1% | 79.4% |