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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00125
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00125
Identity
- Kingdom:
- phage
Quality
72.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-109
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.70 | 24.0 | 4.08e-01 | 86.8% | 97.0% |
| 6ks6G01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.66 | 46.0 | 3.44e-01 | 70.8% | 89.6% |
| 2kxqA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.64 | 22.0 | 3.54e-01 | 86.8% | 100.0% |
| 4cswA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.59 | 39.0 | 3.36e-01 | 83.0% | 41.5% |
| 3le4A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 28.0 | 3.70e-01 | 84.9% | 94.5% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 28.0 | 3.36e-01 | 81.1% | 78.8% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.53 | 31.0 | 3.67e-01 | 92.5% | 90.9% |
| 2arzA02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.52 | 32.0 | 3.43e-01 | 75.5% | 72.7% |
| 3p8aA02 | 2.60.40.4320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 28.0 | 2.97e-01 | 91.5% | 57.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4975535 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.66 | 42.0 | 4.78e-01 | 96.2% | 86.3% |
| 3344139 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 30.0 | 3.84e-01 | 83.0% | 80.0% |
| 3803938 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.63 | 38.0 | 4.39e-01 | 75.5% | 84.0% |
| 3329380 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.63 | 37.0 | 3.68e-01 | 76.4% | 54.8% |
| 3900771 | 330.9.1.0 ↗ | a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p | 0.61 | 34.0 | 4.20e-01 | 97.2% | 93.3% |
| 3482775 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.58 | 24.0 | 3.42e-01 | 89.6% | 84.4% |
| 3823898 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 31.0 | 4.02e-01 | 88.7% | 98.2% |
| 3354326 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 29.0 | 3.72e-01 | 88.7% | 85.0% |
| 3618504 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 28.0 | 3.51e-01 | 85.8% | 80.0% |
| 4933213 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.56 | 31.0 | 3.66e-01 | 75.5% | 80.0% |
| 5050109 | 375.1.1.31 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 | 0.54 | 32.0 | 3.53e-01 | 72.6% | 70.6% |
| 4562142 | 136.1.1.1 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase | 0.54 | 41.0 | 2.85e-01 | 79.2% | 32.3% |
| 4001872 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.54 | 42.0 | 3.57e-01 | 84.9% | 76.2% |
| 5079725 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 29.0 | 3.65e-01 | 74.5% | 91.7% |
| 3323471 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.53 | 28.0 | 3.62e-01 | 84.9% | 98.2% |
| 4027011 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 38.0 | 2.71e-01 | 78.3% | 34.4% |
| 3933098 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 31.0 | 3.71e-01 | 91.5% | 100.0% |
| 3246050 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 31.0 | 3.37e-01 | 88.7% | 72.2% |
| 5031247 | 3755.3.1.127 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N | 0.50 | 27.0 | 2.39e-01 | 92.5% | 32.4% |