←Back to structures
RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00140
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00140
Identity
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-50
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 39.0 | 3.33e-01 | 70.0% | 75.6% |
| 3hrzB01 | 2.20.130.20 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › | 0.56 | 39.0 | 3.51e-01 | 76.0% | 56.6% |
| 4fd0A01 | 2.60.40.3630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 44.0 | 3.97e-01 | 96.0% | 100.0% |
| 6usmB01 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.54 | 37.0 | 2.79e-01 | 74.0% | 81.6% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.53 | 37.0 | 2.73e-01 | 78.0% | 56.4% |
| 1i24A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 38.0 | 2.62e-01 | 94.0% | 64.0% |
| 2f4mA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.50 | 34.0 | 3.45e-01 | 72.0% | 88.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4962895 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 41.0 | 4.03e-01 | 70.0% | 67.3% |
| 5044742 | 375.1.1.95 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 | 0.58 | 39.0 | 3.62e-01 | 72.0% | 75.4% |
| 5028378 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 39.0 | 4.08e-01 | 78.0% | 86.7% |
| 3639514 | 2003.1.2.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 | 0.54 | 36.0 | 2.19e-01 | 74.0% | 11.1% |
| 3457887 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 33.0 | 3.42e-01 | 70.0% | 66.7% |
| 5029199 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 35.0 | 3.00e-01 | 70.0% | 60.0% |
| 2141918 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 37.0 | 2.69e-01 | 90.0% | 60.2% |