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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00227

Bact-Vir

RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00227

Identity

Kingdom:
phage

Quality

90.1 mean pLDDT

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-101
PDB
Domain cluster: rep: MK504444.1__QBJ03634.1__UCC3521_0096__00096__D7-98
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00216.27 best Bac_DNA_binding 38.3 1.70e-09 92.8% 92.2%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.91 83.0 8.34e-01 99.0% 95.8%
2np2A00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.90 84.0 8.23e-01 97.9% 95.1%
5ekaA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.89 69.0 7.42e-01 94.8% 91.8%
4pt4B00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.88 77.0 7.74e-01 93.8% 91.8%
2iieA01 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.85 75.0 7.25e-01 94.8% 87.0%
2ndpA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.83 74.0 7.35e-01 93.8% 91.9%
4n1vA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.80 70.0 7.16e-01 93.8% 95.7%
6lmjB00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.79 69.0 6.93e-01 93.8% 95.9%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.77 63.0 6.62e-01 93.8% 94.3%
1wtuA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.66 60.0 5.97e-01 100.0% 97.0%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.51 30.0 2.57e-01 78.4% 33.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073165 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.94 82.0 8.53e-01 93.8% 97.8%
4662987 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.93 83.0 8.42e-01 97.9% 95.8%
4240651 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.92 81.0 8.07e-01 94.8% 89.0%
4284216 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.92 82.0 8.32e-01 97.9% 95.8%
4508411 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.91 84.0 8.31e-01 100.0% 93.0%
3971236 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.91 63.0 7.21e-01 93.8% 94.5%
4227571 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.90 85.0 8.45e-01 100.0% 96.0%
222497 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.90 79.0 7.90e-01 93.8% 90.8%
4108127 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.90 80.0 8.12e-01 93.8% 94.7%
4194238 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.90 69.0 7.63e-01 93.8% 96.2%
163570 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.90 84.0 8.23e-01 97.9% 95.1%
4274974 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.90 82.0 8.11e-01 97.9% 93.0%
4681823 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.89 79.0 7.88e-01 97.9% 91.0%
4088528 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.89 84.0 8.36e-01 100.0% 97.0%
4183750 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.88 66.0 7.26e-01 100.0% 93.8%
4051851 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.87 77.0 7.69e-01 94.8% 98.0%
3964061 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.86 81.0 7.88e-01 99.0% 97.1%
4289808 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.84 57.0 6.67e-01 89.7% 97.1%
1916727 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.83 74.0 7.35e-01 93.8% 91.9%
4168202 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.72 62.0 6.39e-01 93.8% 96.8%
3705135 101.17.1.3 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_1 0.65 55.0 5.70e-01 89.7% 100.0%
2909 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.64 56.0 5.64e-01 100.0% 98.0%
3483174 5052.1.1.1 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.55 42.0 2.72e-01 81.4% 72.9%