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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00278

Bact-Vir

RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00278

Identity

Kingdom:
phage

Quality

66.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-118
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.66 59.0 5.68e-01 100.0% 91.0%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.52 36.0 3.34e-01 73.5% 76.3%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.51 41.0 3.68e-01 94.9% 63.0%
2kwbA00 2.170.150.10 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 0.50 38.0 3.21e-01 83.7% 98.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4436971 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.76 70.0 6.07e-01 100.0% 82.8%
4662972 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.76 69.0 6.28e-01 100.0% 90.8%
4058682 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.76 69.0 6.12e-01 100.0% 82.1%
4158735 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.76 69.0 6.11e-01 100.0% 85.7%
4494566 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.75 69.0 5.99e-01 100.0% 82.1%
4131476 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.75 69.0 6.09e-01 100.0% 82.1%
4059991 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.75 69.0 6.17e-01 100.0% 87.4%
4372395 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.75 69.0 6.02e-01 100.0% 81.1%
3963810 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.75 68.0 6.04e-01 100.0% 85.0%
4389342 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.74 68.0 6.00e-01 100.0% 85.0%
4478720 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.74 67.0 6.08e-01 100.0% 93.1%
4180206 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.62 56.0 5.47e-01 100.0% 98.1%
5013669 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 45.0 4.76e-01 91.8% 94.1%
3383246 1.1.11.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.56 40.0 4.29e-01 76.5% 95.3%
3827179 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.55 32.0 3.64e-01 99.0% 78.6%
4969626 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 38.0 3.54e-01 73.5% 80.8%
5013280 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 42.0 4.27e-01 93.9% 89.5%
4945485 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 4.26e-01 99.0% 93.7%
3406310 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 4.23e-01 99.0% 85.8%
3689240 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.51 39.0 2.87e-01 84.7% 79.9%
D2 high residues 139-327
PDB