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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00309
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00309
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 78-226
Domain cluster:
rep: OQ326496.2__WDQ45493.1__X__00095__D923-1043_1154-1184
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14579.13 best | HHH_6 | 72.5 | 3.80e-20 | 57.7% | 96.7% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4208827 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.89 | 86.0 | 7.76e-01 | 100.0% | 93.2% |
| 4356978 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.89 | 85.0 | 7.90e-01 | 100.0% | 90.0% |
| 3589922 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.88 | 84.0 | 8.01e-01 | 100.0% | 90.0% |
| 3963903 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.88 | 84.0 | 7.76e-01 | 100.0% | 89.4% |
| 4319349 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.87 | 83.0 | 7.84e-01 | 100.0% | 89.1% |
| 4073066 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.87 | 83.0 | 7.83e-01 | 100.0% | 87.4% |
| 4061607 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.87 | 83.0 | 7.62e-01 | 100.0% | 89.7% |
| 3989404 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.87 | 81.0 | 7.90e-01 | 100.0% | 90.6% |
| 2132559 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.87 | 63.0 | 6.79e-01 | 73.8% | 89.1% |
| 4641808 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.86 | 82.0 | 7.56e-01 | 100.0% | 89.2% |
| 3959918 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.86 | 83.0 | 6.95e-01 | 100.0% | 71.3% |
| 4288348 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.86 | 81.0 | 7.48e-01 | 100.0% | 87.6% |
| 3969044 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.85 | 81.0 | 7.21e-01 | 100.0% | 90.5% |
| 3839743 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.84 | 80.0 | 7.17e-01 | 100.0% | 89.7% |
| 4452667 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.82 | 78.0 | 7.43e-01 | 100.0% | 87.1% |
| 4162931 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.82 | 77.0 | 7.35e-01 | 100.0% | 88.2% |
| 4387225 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.81 | 77.0 | 7.26e-01 | 100.0% | 87.4% |
| 4662943 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.81 | 75.0 | 7.19e-01 | 100.0% | 87.3% |
| 3987438 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.79 | 54.0 | 5.35e-01 | 86.6% | 67.1% |
| 4116376 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.78 | 71.0 | 6.95e-01 | 100.0% | 88.7% |
D2
high
residues 242-372
Domain cluster:
rep: NC_070930.1__YP_010665032.1__PQB32_gp02__00002__D66-169
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8aasC01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.86 | 51.0 | 5.80e-01 | 96.9% | 76.5% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 60.0 | 6.37e-01 | 97.7% | 87.1% |
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 55.0 | 5.75e-01 | 96.9% | 76.4% |
| 4gnxB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 57.0 | 5.93e-01 | 96.9% | 79.5% |
| 2k5vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 55.0 | 6.28e-01 | 97.7% | 95.9% |
| 4me3A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 56.0 | 6.44e-01 | 96.9% | 100.0% |
| 3kf6A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 60.0 | 5.91e-01 | 96.9% | 77.2% |
| 1xjvA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 56.0 | 5.45e-01 | 97.7% | 69.0% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 51.0 | 6.14e-01 | 77.9% | 98.9% |
| 1fguB02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 58.0 | 5.97e-01 | 97.7% | 83.1% |
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 52.0 | 5.68e-01 | 78.6% | 83.5% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 44.0 | 5.62e-01 | 73.3% | 97.4% |
| 1jb7A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 53.0 | 5.65e-01 | 96.9% | 82.8% |
| 4egvA02 | 2.40.50.840 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.73 | 42.0 | 5.43e-01 | 93.1% | 98.7% |
| 6aqgA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 58.0 | 5.68e-01 | 100.0% | 77.3% |
| 3k7uC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 51.0 | 5.84e-01 | 77.9% | 96.9% |
| 4dapA01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.71 | 39.0 | 4.83e-01 | 74.0% | 87.5% |
| 3rd4B00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.70 | 43.0 | 5.20e-01 | 75.6% | 97.6% |
| 4joiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 55.0 | 5.42e-01 | 96.9% | 78.0% |
| 3qwnD01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.68 | 37.0 | 4.82e-01 | 73.3% | 98.6% |
| 1x6oA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 40.0 | 4.97e-01 | 74.0% | 97.5% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.67 | 40.0 | 5.00e-01 | 96.9% | 96.3% |
| 6lbrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 61.0 | 5.27e-01 | 96.9% | 87.3% |
| 3iayA01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 44.0 | 5.01e-01 | 74.8% | 90.8% |
| 2vqeL00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 43.0 | 4.45e-01 | 90.8% | 70.2% |
| 3d0fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 36.0 | 4.71e-01 | 71.8% | 100.0% |
| 3nwsA01 | 2.40.50.800 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 56.0 | 5.49e-01 | 97.7% | 90.8% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 28.0 | 3.50e-01 | 93.1% | 76.0% |
| 2wkcB00 | 2.40.50.400 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein | 0.58 | 38.0 | 4.40e-01 | 73.3% | 97.8% |
| 4twlA00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.51 | 39.0 | 3.26e-01 | 81.7% | 65.7% |
| 1h6hA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 43.0 | 4.18e-01 | 90.8% | 92.3% |
| 2l73A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.50 | 41.0 | 4.04e-01 | 87.8% | 89.5% |
ECOD (82)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4993339 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.85 | 60.0 | 6.87e-01 | 97.7% | 95.0% |
| 3654541 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.83 | 63.0 | 6.86e-01 | 97.7% | 92.7% |
| 4952161 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 53.0 | 6.53e-01 | 96.9% | 98.8% |
| 4221404 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.82 | 47.0 | 6.02e-01 | 74.8% | 95.0% |
| 3938658 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.82 | 62.0 | 6.23e-01 | 97.7% | 78.5% |
| 3675935 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.80 | 60.0 | 5.98e-01 | 97.7% | 75.6% |
| 5030410 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.79 | 56.0 | 6.53e-01 | 96.2% | 100.0% |
| 4165771 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.79 | 61.0 | 6.09e-01 | 99.2% | 77.8% |
| 3314558 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.79 | 62.0 | 5.99e-01 | 99.2% | 73.6% |
| 3593282 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.78 | 52.0 | 6.08e-01 | 78.6% | 93.7% |
| 4942967 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.78 | 61.0 | 6.17e-01 | 96.9% | 81.5% |
| 4028113 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.78 | 61.0 | 5.95e-01 | 97.7% | 75.7% |
| 3194612 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.78 | 59.0 | 5.72e-01 | 97.7% | 71.0% |
| 5076488 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.78 | 57.0 | 6.51e-01 | 96.2% | 100.0% |
| 4014971 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 59.0 | 5.94e-01 | 97.7% | 79.2% |
| 3219203 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.77 | 60.0 | 5.94e-01 | 97.7% | 77.8% |
| 4982481 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 55.0 | 6.34e-01 | 95.4% | 100.0% |
| 3446499 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.77 | 61.0 | 6.39e-01 | 99.2% | 90.0% |
| 3661180 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.76 | 51.0 | 5.80e-01 | 77.1% | 89.0% |
| 3214812 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.76 | 53.0 | 6.23e-01 | 90.8% | 100.0% |
| 3811669 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.76 | 58.0 | 6.31e-01 | 97.7% | 94.5% |
| 3374948 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.76 | 51.0 | 5.85e-01 | 73.3% | 90.0% |
| 3879179 | 2.1.1.169 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB1 | 0.75 | 60.0 | 5.36e-01 | 97.7% | 61.7% |
| 5000724 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 50.0 | 5.77e-01 | 73.3% | 92.6% |
| 3342201 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.75 | 58.0 | 6.19e-01 | 99.2% | 91.3% |
| 3827585 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.75 | 58.0 | 6.46e-01 | 96.2% | 100.0% |
| 3446498 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.75 | 61.0 | 5.97e-01 | 96.9% | 79.3% |
| 3441179 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.74 | 60.0 | 6.15e-01 | 99.2% | 88.0% |
| 3358498 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 50.0 | 5.67e-01 | 96.2% | 89.0% |
| 3356276 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.74 | 60.0 | 6.13e-01 | 99.2% | 88.0% |
| 4026723 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.74 | 57.0 | 6.22e-01 | 97.7% | 95.5% |
| 3643736 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.74 | 60.0 | 5.77e-01 | 97.7% | 75.9% |
| 3807621 | 2.1.1.348 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223, Rep-A_N | 0.74 | 60.0 | 4.58e-01 | 99.2% | 40.0% |
| 3642370 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.74 | 59.0 | 6.14e-01 | 99.2% | 90.0% |
| 3366703 | 2.1.1.157 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 | 0.74 | 60.0 | 6.00e-01 | 100.0% | 83.0% |
| 3679986 | 2.1.1.305 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C, REPA_OB_2 | 0.74 | 60.0 | 4.45e-01 | 96.9% | 36.4% |
| 3396324 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.74 | 34.0 | 4.75e-01 | 74.0% | 89.2% |
| 3662669 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.74 | 61.0 | 5.79e-01 | 97.7% | 75.3% |
| 3666655 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 60.0 | 6.14e-01 | 97.7% | 89.6% |
| 3680383 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.73 | 58.0 | 6.11e-01 | 99.2% | 90.8% |
| 3214780 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.73 | 54.0 | 5.96e-01 | 96.2% | 95.2% |
| 3625857 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.73 | 59.0 | 5.96e-01 | 100.0% | 85.4% |
| 3830552 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.73 | 59.0 | 5.78e-01 | 97.7% | 79.3% |
| 3734354 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.72 | 59.0 | 5.77e-01 | 96.9% | 79.3% |
| 3667340 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.72 | 59.0 | 6.10e-01 | 97.7% | 91.2% |
| 5036328 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 45.0 | 5.47e-01 | 71.8% | 96.5% |
| 3931674 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 58.0 | 6.17e-01 | 99.2% | 97.4% |
| 3508573 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 44.0 | 4.94e-01 | 93.9% | 79.0% |
| 5015437 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.71 | 54.0 | 5.42e-01 | 97.7% | 77.8% |
| 5028838 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 45.0 | 5.45e-01 | 73.3% | 98.8% |
| 3736842 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 64.0 | 5.44e-01 | 97.7% | 67.3% |
| 3222288 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 53.0 | 5.63e-01 | 94.7% | 91.3% |
| 3673251 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.68 | 51.0 | 4.65e-01 | 78.6% | 58.9% |
| 3579168 | 2.1.1.179 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N | 0.68 | 48.0 | 4.58e-01 | 73.3% | 91.0% |
| 3829075 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 56.0 | 5.17e-01 | 86.3% | 100.0% |
| 3214819 | 2.1.1.179 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N | 0.67 | 48.0 | 4.63e-01 | 72.5% | 100.0% |
| 4944520 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 46.0 | 3.77e-01 | 70.2% | 77.8% |
| 3932593 | 2.1.1.179 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N | 0.66 | 46.0 | 5.10e-01 | 71.8% | 100.0% |
| 3791987 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.65 | 50.0 | 5.37e-01 | 95.4% | 92.2% |
| 3514098 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.65 | 50.0 | 5.30e-01 | 93.9% | 92.2% |
| 3963716 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 48.0 | 5.23e-01 | 92.4% | 91.8% |
| 3659298 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.64 | 54.0 | 4.97e-01 | 90.1% | 84.8% |
| 4025113 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 45.0 | 4.65e-01 | 73.3% | 87.2% |
| 3480547 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 50.0 | 5.23e-01 | 95.4% | 92.4% |
| 3935835 | 2.1.1.68 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C | 0.63 | 57.0 | 5.60e-01 | 97.7% | 92.1% |
| 3934534 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 57.0 | 5.58e-01 | 98.5% | 91.4% |
| 3993896 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 57.0 | 5.58e-01 | 99.2% | 93.1% |
| 3417038 | 2.1.1.179 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REV3_N | 0.62 | 51.0 | 5.25e-01 | 95.4% | 92.0% |
| 3926357 | 2.3.1.1 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP | 0.61 | 44.0 | 4.38e-01 | 74.8% | 77.9% |
| 3580766 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 56.0 | 5.47e-01 | 99.2% | 93.1% |
| 3704723 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.61 | 50.0 | 5.09e-01 | 94.7% | 89.6% |
| 3492348 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.61 | 42.0 | 4.07e-01 | 93.9% | 62.8% |
| 3592676 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 49.0 | 5.06e-01 | 95.4% | 89.6% |
| 4958552 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 38.0 | 4.10e-01 | 73.3% | 72.2% |
| 3621460 | 2.1.1.68 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C | 0.60 | 55.0 | 5.33e-01 | 99.2% | 91.7% |
| 3585893 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 55.0 | 5.32e-01 | 99.2% | 97.2% |
| 3742516 | 2.1.1.140 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SURF1 | 0.59 | 52.0 | 4.65e-01 | 93.9% | 75.6% |
| 3891602 | 2.1.1.276 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1, REV3_N | 0.58 | 50.0 | 5.11e-01 | 95.4% | 93.8% |
| 5008528 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.57 | 43.0 | 4.65e-01 | 84.0% | 92.7% |
| 3279919 | 2.1.1.140 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SURF1 | 0.57 | 51.0 | 4.68e-01 | 96.2% | 88.2% |
| 3474148 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 41.0 | 4.27e-01 | 93.9% | 80.0% |
| 3869259 | 213.1.1.22 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N | 0.50 | 33.0 | 3.15e-01 | 99.2% | 55.5% |
D3
medium
residues 20-77
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 44.0 | 3.55e-01 | 89.7% | 44.0% |
| 2uvfB02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.55 | 44.0 | 2.74e-01 | 98.3% | 74.9% |
| 4yxtA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 47.0 | 3.49e-01 | 98.3% | 50.7% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.34e-01 | 82.8% | 94.5% |
| 3p3vA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.53 | 37.0 | 2.68e-01 | 72.4% | 27.3% |
| 4o7iA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 42.0 | 3.03e-01 | 89.7% | 64.3% |
| 2iv2X02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 39.0 | 2.48e-01 | 79.3% | 59.0% |
| 5hnmC00 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.52 | 37.0 | 2.75e-01 | 79.3% | 77.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3230566 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.69 | 49.0 | 3.06e-01 | 74.1% | 23.5% |
| 3614788 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.66 | 47.0 | 2.87e-01 | 74.1% | 41.9% |
| 3213760 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.64 | 47.0 | 2.99e-01 | 81.0% | 31.1% |
| 3234719 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.64 | 50.0 | 3.12e-01 | 86.2% | 20.9% |
| 3213063 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.63 | 48.0 | 2.99e-01 | 81.0% | 20.3% |
| 3227008 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.63 | 45.0 | 2.82e-01 | 74.1% | 21.5% |
| 3820172 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 45.0 | 2.81e-01 | 75.9% | 23.8% |
| 3225918 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.63 | 50.0 | 3.15e-01 | 86.2% | 20.6% |
| 3704475 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.62 | 47.0 | 3.15e-01 | 79.3% | 27.4% |
| 3494950 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.61 | 46.0 | 4.12e-01 | 79.3% | 68.8% |
| 3219796 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.61 | 49.0 | 3.02e-01 | 87.9% | 46.5% |
| 3211980 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.60 | 48.0 | 3.02e-01 | 87.9% | 21.3% |
| 3238272 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.60 | 46.0 | 2.89e-01 | 84.5% | 20.9% |
| 3218566 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.59 | 49.0 | 3.01e-01 | 89.7% | 31.2% |
| 3221205 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.58 | 46.0 | 2.89e-01 | 86.2% | 20.1% |
| None | — | 0.58 | 44.0 | 2.72e-01 | 84.5% | 52.5% | |
| 3574714 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.57 | 49.0 | 3.51e-01 | 100.0% | 43.2% |
| 3356095 | 601.37.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Photosystem II lipoprotein Psb27 › Photosystem II lipoprotein Psb27 › PSII_Pbs27 | 0.57 | 46.0 | 3.58e-01 | 86.2% | 75.0% |
| 3800146 | 3767.1.1.0 ↗ | a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain | 0.57 | 46.0 | 3.00e-01 | 94.8% | 70.2% |
| 4929718 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 39.0 | 3.35e-01 | 86.2% | 41.9% |
| 4000569 | 135.1.1.1 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha | 0.56 | 42.0 | 3.26e-01 | 82.8% | 50.0% |
| 3214589 | 5001.1.1.106 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str | 0.56 | 43.0 | 2.73e-01 | 86.2% | 21.2% |
| 3433537 | 376.1.2.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 | 0.52 | 44.0 | 3.50e-01 | 96.6% | 97.6% |
| 3874383 | 7575.1.1.1 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 | 0.52 | 35.0 | 2.53e-01 | 70.7% | 69.7% |
| 3809256 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 42.0 | 3.07e-01 | 93.1% | 68.8% |