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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00319
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00319
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-53
Domain cluster:
rep: PPR_Contig_984988_prodigal-single.1__X__X__00198__D2-48
D2
high
residues 64-112
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.62 | 42.0 | 3.52e-01 | 81.6% | 38.7% |
| 4kn7D01 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.58 | 41.0 | 2.97e-01 | 75.5% | 31.6% |
| 1u7pD00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 41.0 | 2.93e-01 | 79.6% | 41.6% |
| 2rh8A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 48.0 | 2.95e-01 | 95.9% | 94.6% |
| 6kghA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 49.0 | 3.26e-01 | 100.0% | 91.8% |
| 1f2uB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 45.0 | 3.30e-01 | 100.0% | 31.7% |
| 2i50A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 45.0 | 3.47e-01 | 100.0% | 97.5% |
| 6wwdB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.54 | 42.0 | 2.89e-01 | 89.8% | 40.5% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.53 | 39.0 | 3.16e-01 | 79.6% | 91.8% |
| 8gr2A01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 45.0 | 3.05e-01 | 100.0% | 71.3% |
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.51 | 44.0 | 3.32e-01 | 100.0% | 86.4% |
| 3icsA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 43.0 | 2.93e-01 | 98.0% | 29.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3400851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.85 | 54.0 | 5.61e-01 | 77.6% | 71.1% |
| 5023381 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 61.0 | 5.39e-01 | 95.9% | 64.0% |
| 4285153 | 2004.1.1.80 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin | 0.62 | 42.0 | 2.73e-01 | 71.4% | 95.6% |
| 5075187 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.61 | 44.0 | 4.10e-01 | 75.5% | 95.0% |
| 4966853 | 375.1.1.324 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF1922 | 0.59 | 43.0 | 3.62e-01 | 77.6% | 95.0% |
| 3179147 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.58 | 44.0 | 3.66e-01 | 81.6% | 74.1% |
| 3832617 | 109.4.1.843 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM | 0.57 | 44.0 | 2.80e-01 | 83.7% | 32.7% |
| 3220575 | 206.1.2.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK | 0.57 | 49.0 | 3.03e-01 | 100.0% | 38.1% |
| 3306435 | 245.3.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Colicin S4 receptor-binding domain › Colicin S4 receptor-binding domain › BRX | 0.57 | 41.0 | 4.03e-01 | 79.6% | 87.0% |
| 3335040 | 5.1.3.129 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BRX | 0.56 | 41.0 | 3.98e-01 | 79.6% | 85.5% |
| 3817316 | 376.1.4.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog | 0.56 | 38.0 | 3.32e-01 | 71.4% | 57.3% |
| 3320717 | 3433.1.1.3 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain › BRX | 0.56 | 40.0 | 3.98e-01 | 79.6% | 85.2% |
| 3827622 | 12.2.1.7 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › BRX | 0.56 | 40.0 | 3.85e-01 | 79.6% | 76.7% |
| 3376285 | 706.1.1.4 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › BRX | 0.56 | 40.0 | 3.98e-01 | 79.6% | 88.7% |
| 4515677 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.55 | 39.0 | 3.05e-01 | 75.5% | 41.2% |
| 3724406 | 376.1.4.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 | 0.55 | 42.0 | 3.85e-01 | 85.7% | 72.3% |
| 3602038 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 2.57e-01 | 95.9% | 10.1% |
| 3455429 | 376.1.4.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog | 0.54 | 38.0 | 3.55e-01 | 77.6% | 76.9% |
| 3973069 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.54 | 40.0 | 2.65e-01 | 81.6% | 25.9% |
| 3739728 | 376.1.4.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog | 0.52 | 39.0 | 3.81e-01 | 83.7% | 100.0% |
| 3584930 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.52 | 33.0 | 3.14e-01 | 81.6% | 51.7% |
| 3980273 | 829.1.1.3 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 | 0.51 | 43.0 | 3.16e-01 | 91.8% | 67.2% |
| 4882933 | 3343.1.1.3 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_N_terminal | 0.51 | 43.0 | 2.95e-01 | 100.0% | 25.8% |
| 3822617 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.50 | 35.0 | 3.05e-01 | 95.9% | 48.0% |