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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00399
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00399
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 127-239
Domain cluster:
rep: MH727593.1__AXY83375.1__X__00058__D47-136
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qqpA03 | 2.60.40.4260 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 41.0 | 3.93e-01 | 73.5% | 96.4% |
| 3v0dA02 | 2.60.40.1110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 41.0 | 3.82e-01 | 75.2% | 93.7% |
| 5yyfA00 | 2.60.40.1970 | Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain | 0.57 | 40.0 | 3.80e-01 | 73.5% | 85.5% |
| 1bdyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.56 | 40.0 | 3.95e-01 | 74.3% | 95.9% |
| 1i78B00 | 2.40.128.90 | Mainly Beta › Beta Barrel › Lipocalin › OMPT-like | 0.55 | 40.0 | 3.04e-01 | 77.0% | 99.7% |
| 3nppA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.53 | 29.0 | 3.22e-01 | 74.3% | 65.5% |
| 1alyA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 35.0 | 3.28e-01 | 71.7% | 97.3% |
| 3wirA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.50 | 40.0 | 3.16e-01 | 86.7% | 85.9% |
| 1ywmA01 | 2.60.500.10 | Mainly Beta › Sandwich › Surface Active Protein fold › Surface Active Protein domain | 0.50 | 32.0 | 3.39e-01 | 74.3% | 73.5% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043856 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.54 | 38.0 | 3.04e-01 | 72.6% | 100.0% |
| 3210890 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 37.0 | 3.60e-01 | 73.5% | 97.7% |
| 3633294 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.51 | 36.0 | 3.38e-01 | 71.7% | 86.2% |
| 3667441 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.50 | 37.0 | 3.52e-01 | 76.1% | 71.5% |
D2
high
residues 311-395
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.50 | 38.0 | 2.90e-01 | 82.4% | 81.4% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3817650 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.58 | 50.0 | 4.79e-01 | 98.8% | 95.0% |
| 3262730 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 26.0 | 3.26e-01 | 88.2% | 77.1% |
| 3779203 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.05e-01 | 70.6% | 40.0% |
D3
high
residues 397-484
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00138__D61-144
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.76 | 58.0 | 6.38e-01 | 94.3% | 100.0% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.76 | 56.0 | 5.60e-01 | 94.3% | 75.6% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.75 | 55.0 | 5.42e-01 | 94.3% | 73.1% |
| 1v0fB03 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.71 | 63.0 | 6.39e-01 | 96.6% | 100.0% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.71 | 62.0 | 5.50e-01 | 97.7% | 94.6% |
| 2nv4A00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.71 | 61.0 | 5.33e-01 | 94.3% | 94.7% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.71 | 59.0 | 6.16e-01 | 92.0% | 100.0% |
| 3okxB00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.71 | 61.0 | 5.08e-01 | 94.3% | 85.2% |
| 2v31A01 | 2.40.30.180 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain | 0.71 | 62.0 | 6.01e-01 | 98.9% | 88.7% |
| 1krhA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.70 | 60.0 | 5.87e-01 | 94.3% | 100.0% |
| 6mv2A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.70 | 58.0 | 5.52e-01 | 90.9% | 100.0% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.69 | 61.0 | 5.86e-01 | 96.6% | 100.0% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.68 | 58.0 | 5.39e-01 | 94.3% | 98.2% |
| 4b3fX02 | 2.40.30.270 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.68 | 57.0 | 5.56e-01 | 93.2% | 100.0% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 58.0 | 5.13e-01 | 96.6% | 73.3% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.67 | 59.0 | 5.59e-01 | 98.9% | 91.3% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 54.0 | 5.66e-01 | 94.3% | 100.0% |
| 4g6iC02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 59.0 | 5.85e-01 | 98.9% | 93.6% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.66 | 54.0 | 5.54e-01 | 90.9% | 100.0% |
| 2egvA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.65 | 45.0 | 5.00e-01 | 78.4% | 95.5% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.65 | 50.0 | 4.42e-01 | 81.8% | 58.4% |
| 3gg8C03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.65 | 55.0 | 5.31e-01 | 92.0% | 95.9% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 52.0 | 5.16e-01 | 87.5% | 85.9% |
| 8eq1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.63 | 50.0 | 5.08e-01 | 86.4% | 100.0% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 50.0 | 4.76e-01 | 87.5% | 81.6% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.62 | 47.0 | 4.99e-01 | 80.7% | 98.7% |
| 2derA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 46.0 | 4.64e-01 | 85.2% | 81.6% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 49.0 | 4.83e-01 | 89.8% | 80.4% |
| 4cshA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.61 | 47.0 | 3.87e-01 | 97.7% | 45.1% |
| 4k4kA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.59 | 46.0 | 4.11e-01 | 86.4% | 80.3% |
| 3nswA00 | 2.40.50.780 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.58 | 41.0 | 3.88e-01 | 95.5% | 61.3% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 45.0 | 4.52e-01 | 88.6% | 97.7% |
| 3hrpA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 4.41e-01 | 93.2% | 82.1% |
| 5jzgA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 47.0 | 3.59e-01 | 96.6% | 70.8% |
| 2bseA00 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.56 | 44.0 | 4.22e-01 | 96.6% | 74.8% |
| 2wanA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.97e-01 | 93.2% | 68.6% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.55 | 48.0 | 3.64e-01 | 97.7% | 43.0% |
| 2vrsA03 | 2.60.90.40 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.55 | 46.0 | 4.13e-01 | 96.6% | 75.0% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 46.0 | 4.47e-01 | 98.9% | 87.8% |
| 2d7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 3.95e-01 | 89.8% | 81.8% |
| 4odbA00 | 2.60.90.20 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain | 0.53 | 45.0 | 3.74e-01 | 95.5% | 83.3% |
| 4j27A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 38.0 | 3.87e-01 | 93.2% | 77.5% |
| 1kkeA02 | 2.60.90.20 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain | 0.53 | 45.0 | 3.87e-01 | 94.3% | 96.5% |
| 1iarB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 4.27e-01 | 98.9% | 86.5% |
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.52 | 41.0 | 2.62e-01 | 96.6% | 15.5% |
| 4lr4A02 | 2.60.120.1430 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 44.0 | 3.65e-01 | 97.7% | 53.6% |
| 1d5rA02 | 2.60.40.1110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 39.0 | 3.44e-01 | 88.6% | 54.9% |
| 2je8B05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.92e-01 | 88.6% | 80.9% |
| 4aefA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.96e-01 | 97.7% | 82.1% |
| 2w47A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 43.0 | 3.78e-01 | 97.7% | 97.0% |
ECOD (79)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995824 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 61.0 | 6.67e-01 | 87.5% | 100.0% |
| 4943228 | 1.1.7.146 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_Xtn | 0.77 | 55.0 | 6.25e-01 | 88.6% | 100.0% |
| 3204011 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 58.0 | 5.81e-01 | 94.3% | 78.9% |
| 4245518 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 59.0 | 6.32e-01 | 95.5% | 97.3% |
| 5078547 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 57.0 | 5.58e-01 | 92.0% | 73.7% |
| 3488003 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.76 | 65.0 | 6.65e-01 | 93.2% | 98.8% |
| 4316004 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 56.0 | 5.75e-01 | 95.5% | 81.2% |
| 4163711 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 54.0 | 5.55e-01 | 92.0% | 77.6% |
| 4273414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.75 | 56.0 | 6.18e-01 | 92.0% | 98.6% |
| 4128405 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.75 | 55.0 | 6.10e-01 | 93.2% | 97.1% |
| 3975132 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 58.0 | 5.84e-01 | 97.7% | 82.2% |
| 3987844 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.74 | 63.0 | 6.15e-01 | 92.0% | 96.8% |
| 3387360 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 58.0 | 5.93e-01 | 94.3% | 87.1% |
| 3967745 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 58.0 | 6.24e-01 | 94.3% | 100.0% |
| 4060488 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 60.0 | 6.24e-01 | 96.6% | 96.2% |
| 4066146 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 59.0 | 5.57e-01 | 96.6% | 72.4% |
| 4403870 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 57.0 | 5.58e-01 | 94.3% | 76.8% |
| 4162532 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 57.0 | 6.12e-01 | 96.6% | 98.7% |
| 4230122 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 58.0 | 5.62e-01 | 95.5% | 76.0% |
| 3243970 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 65.0 | 6.28e-01 | 98.9% | 99.0% |
| 4622734 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 65.0 | 6.25e-01 | 97.7% | 98.0% |
| 4028468 | 1.1.7.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH | 0.73 | 64.0 | 6.09e-01 | 97.7% | 96.2% |
| 3783623 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.72 | 61.0 | 5.86e-01 | 92.0% | 98.0% |
| 3452625 | 1.1.7.69 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel | 0.72 | 62.0 | 5.99e-01 | 94.3% | 90.0% |
| 4402716 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.71 | 59.0 | 6.03e-01 | 98.9% | 92.9% |
| 4510320 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.71 | 59.0 | 5.94e-01 | 89.8% | 96.7% |
| 4930890 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 56.0 | 6.04e-01 | 86.4% | 100.0% |
| 3972645 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.71 | 61.0 | 5.24e-01 | 93.2% | 71.1% |
| 3574784 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 62.0 | 5.78e-01 | 97.7% | 94.5% |
| 3789503 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.70 | 62.0 | 5.82e-01 | 96.6% | 99.0% |
| 4976915 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.70 | 60.0 | 5.85e-01 | 94.3% | 91.8% |
| 3786521 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.69 | 60.0 | 5.52e-01 | 96.6% | 93.0% |
| 3975044 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 54.0 | 5.75e-01 | 93.2% | 98.7% |
| 3617006 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 60.0 | 5.56e-01 | 96.6% | 85.5% |
| 4627066 | 1.1.7.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift | 0.68 | 59.0 | 5.46e-01 | 96.6% | 82.6% |
| 2855773 | 1.1.7.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae | 0.68 | 60.0 | 5.37e-01 | 96.6% | 74.8% |
| 5045937 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.68 | 60.0 | 5.74e-01 | 96.6% | 98.0% |
| 3268887 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 59.0 | 5.66e-01 | 94.3% | 94.0% |
| 4319764 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.68 | 56.0 | 5.23e-01 | 100.0% | 71.8% |
| 4429352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 57.0 | 5.70e-01 | 98.9% | 90.0% |
| 3386975 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 58.0 | 5.29e-01 | 94.3% | 97.4% |
| 1790393 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 56.0 | 5.83e-01 | 97.7% | 98.8% |
| 3724971 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 60.0 | 5.56e-01 | 100.0% | 96.4% |
| 4949095 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.66 | 55.0 | 3.58e-01 | 90.9% | 47.5% |
| 4010630 | 2004.1.1.10 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab | 0.65 | 57.0 | 3.64e-01 | 98.9% | 19.8% |
| 4946634 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 54.0 | 5.45e-01 | 97.7% | 94.4% |
| 3313542 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.63 | 55.0 | 5.20e-01 | 95.5% | 98.1% |
| 4098005 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 54.0 | 5.44e-01 | 97.7% | 97.8% |
| 4267752 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 53.0 | 5.26e-01 | 97.7% | 94.7% |
| 4254437 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.62 | 45.0 | 4.62e-01 | 77.3% | 88.2% |
| 3522226 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.62 | 46.0 | 4.41e-01 | 78.4% | 74.0% |
| 4606097 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.62 | 45.0 | 4.58e-01 | 76.1% | 84.5% |
| 4398429 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.62 | 45.0 | 4.72e-01 | 77.3% | 91.3% |
| 3793066 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 45.0 | 4.48e-01 | 78.4% | 76.3% |
| 4060133 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.61 | 53.0 | 5.36e-01 | 100.0% | 98.9% |
| 4634180 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.61 | 54.0 | 5.36e-01 | 100.0% | 98.9% |
| 3744357 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 44.0 | 4.54e-01 | 78.4% | 83.5% |
| 1878750 | 11.1.1.171 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 | 0.61 | 49.0 | 4.82e-01 | 92.0% | 80.4% |
| 4097656 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.61 | 45.0 | 4.40e-01 | 78.4% | 74.7% |
| 4229140 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.60 | 52.0 | 5.19e-01 | 100.0% | 100.0% |
| 3868227 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 51.0 | 5.04e-01 | 97.7% | 92.6% |
| 3249211 | 11.1.1.802 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 | 0.58 | 48.0 | 4.76e-01 | 98.9% | 88.9% |
| 3260571 | 11.1.1.802 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 | 0.57 | 48.0 | 4.69e-01 | 100.0% | 85.3% |
| 3273150 | 11.1.1.802 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 | 0.57 | 50.0 | 4.80e-01 | 98.9% | 86.0% |
| 4431701 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.56 | 48.0 | 4.72e-01 | 98.9% | 93.7% |
| 3256508 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 43.0 | 4.35e-01 | 86.4% | 90.6% |
| 3845669 | 11.1.1.396 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Anth_Ig | 0.54 | 46.0 | 4.51e-01 | 97.7% | 89.5% |
| 2491354 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.54 | 41.0 | 4.05e-01 | 92.0% | 78.1% |
| 3555892 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.53 | 43.0 | 3.53e-01 | 97.7% | 46.5% |
| 3259326 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 4.39e-01 | 97.7% | 89.0% |
| 3936403 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 4.08e-01 | 90.9% | 89.5% |
| 4972050 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 43.0 | 2.78e-01 | 93.2% | 17.4% |
| 3474017 | 11.2.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 | 0.52 | 40.0 | 3.29e-01 | 84.1% | 56.5% |
| 3555135 | 11.1.1.126 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL4Ra_N | 0.52 | 43.0 | 4.09e-01 | 98.9% | 75.5% |
| 3264390 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 4.27e-01 | 98.9% | 87.0% |
| 4929257 | 11.1.1.456 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YtkA | 0.52 | 42.0 | 3.75e-01 | 88.6% | 67.2% |
| 3735749 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 44.0 | 3.55e-01 | 97.7% | 83.9% |
| 3223734 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 42.0 | 4.07e-01 | 100.0% | 85.0% |
| 4444441 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 41.0 | 3.67e-01 | 100.0% | 62.2% |
D4
medium
residues 31-49_248-310_513-586_614-667
Domain cluster:
rep: IMGVR_UViG_648028040_000001-648028040-648194435__D26-229
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3foaB01 | 3.40.50.11780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.78 | 73.0 | 7.20e-01 | 100.0% | 93.2% |
| 3i09A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.73 | 41.0 | 5.08e-01 | 84.8% | 87.1% |
| 2h3hA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 42.0 | 4.97e-01 | 100.0% | 86.5% |
| 4irxA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 42.0 | 4.73e-01 | 92.9% | 79.5% |
| 3c3kA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 40.0 | 4.78e-01 | 94.8% | 87.7% |
| 4wzzA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 40.0 | 4.54e-01 | 91.4% | 79.2% |
| 2vycA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 43.0 | 5.09e-01 | 99.0% | 98.6% |
| 2gruA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 42.0 | 4.60e-01 | 91.0% | 81.8% |
| 3edyA02 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.63 | 59.0 | 4.82e-01 | 100.0% | 93.2% |
| 3lyhA00 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 34.0 | 4.42e-01 | 89.5% | 94.2% |
| 6gt9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 43.0 | 4.69e-01 | 92.9% | 85.1% |
| 2nrhB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 19.0 | 3.45e-01 | 91.9% | 100.0% |
| 1hfvA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 45.0 | 4.99e-01 | 99.0% | 99.4% |
| 6oibA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 38.0 | 4.35e-01 | 91.9% | 88.7% |
| 4twbA01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 41.0 | 4.76e-01 | 95.7% | 100.0% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.58 | 36.0 | 4.47e-01 | 95.7% | 100.0% |
| 1udxA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 44.0 | 4.82e-01 | 98.6% | 97.1% |
| 3ejfA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.57 | 38.0 | 4.26e-01 | 79.5% | 84.9% |
| 4rw0A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 46.0 | 4.93e-01 | 99.0% | 99.5% |
| 1up7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 37.0 | 4.46e-01 | 81.9% | 100.0% |
| 7e76B01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.55 | 40.0 | 4.22e-01 | 97.6% | 81.7% |
| 1k7cA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 48.0 | 4.70e-01 | 97.6% | 96.1% |
| 4p4tA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 48.0 | 4.11e-01 | 99.5% | 83.0% |
| 4cqbA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.50 | 46.0 | 4.07e-01 | 98.6% | 99.0% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164915 | 3019.1.1.11 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Phage_sheath_1 | 0.86 | 69.0 | 6.77e-01 | 99.0% | 77.3% |
| 4988098 | 2499.2.1.0 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 | 0.85 | 67.0 | 6.42e-01 | 100.0% | 71.9% |
| 2468451 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.82 | 63.0 | 6.24e-01 | 100.0% | 75.0% |
| 5004680 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.78 | 74.0 | 6.59e-01 | 100.0% | 74.5% |
| 4650998 | 3755.3.1.562 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Exonuc_VII_L | 0.71 | 43.0 | 4.02e-01 | 95.7% | 48.8% |
| 4576763 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.70 | 44.0 | 3.94e-01 | 97.6% | 45.5% |
| 4451121 | 2007.1.2.29 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Exonuc_VII_L | 0.69 | 45.0 | 4.18e-01 | 98.6% | 52.9% |
| 4284799 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.69 | 45.0 | 4.11e-01 | 98.6% | 50.9% |
| 2432914 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.69 | 44.0 | 4.66e-01 | 98.1% | 71.1% |
| 4219362 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.68 | 42.0 | 4.63e-01 | 97.6% | 74.7% |
| 4917768 | 2499.2.1.0 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 | 0.67 | 61.0 | 5.79e-01 | 94.3% | 90.1% |
| 4889794 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.67 | 60.0 | 5.93e-01 | 94.3% | 89.6% |
| 5023877 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.60 | 30.0 | 3.73e-01 | 100.0% | 76.0% |
| 5060306 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.59 | 37.0 | 4.48e-01 | 95.7% | 94.2% |
| 3598624 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 46.0 | 4.91e-01 | 100.0% | 94.1% |
| 4163961 | 7582.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD | 0.58 | 33.0 | 4.23e-01 | 81.9% | 97.5% |
| 3600191 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 45.0 | 4.42e-01 | 99.5% | 80.0% |
| 3287018 | 2007.13.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.54 | 43.0 | 4.51e-01 | 100.0% | 92.1% |
| 4128176 | 6108.1.1.0 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins | 0.54 | 49.0 | 3.48e-01 | 99.0% | 44.7% |
| 4416806 | 7553.1.1.0 ↗ | a/b three-layered sandwiches › Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) › Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) › Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) | 0.54 | 48.0 | 4.01e-01 | 98.6% | 87.5% |
| 4985616 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.53 | 36.0 | 4.14e-01 | 99.0% | 94.0% |
| 4945457 | 2007.2.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins | 0.53 | 44.0 | 4.66e-01 | 99.5% | 100.0% |
| 3655646 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 49.0 | 4.53e-01 | 99.5% | 88.3% |
| 3958557 | 2002.1.1.152 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 | 0.53 | 48.0 | 3.71e-01 | 99.5% | 90.2% |
| 3684568 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.53 | 46.0 | 4.61e-01 | 99.5% | 91.2% |
| 3494097 | 2004.1.1.453 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1, NOG1 | 0.53 | 45.0 | 4.23e-01 | 100.0% | 74.9% |
| 3779769 | 2003.1.6.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Tubulin nucleotide-binding domain-like › Misat_Tub_SegII+Tubulin_3 | 0.52 | 47.0 | 4.27e-01 | 97.6% | 96.5% |
| 3907192 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.52 | 42.0 | 4.38e-01 | 99.5% | 93.3% |
| 3959850 | 2007.13.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit | 0.51 | 42.0 | 4.40e-01 | 87.1% | 99.5% |
| 4434054 | 2004.1.1.523 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › URGCP_GTPase | 0.51 | 42.0 | 3.60e-01 | 87.1% | 76.4% |
D5
medium
residues 50-126
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vraA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 43.0 | 3.95e-01 | 100.0% | 56.4% |
| 5k6xA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 41.0 | 3.94e-01 | 100.0% | 59.8% |
| 4cbpB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 39.0 | 3.57e-01 | 100.0% | 50.0% |
| 4nzjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 33.0 | 3.20e-01 | 100.0% | 50.5% |
| 1f97A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.49e-01 | 100.0% | 55.2% |
| 2jjuA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.55e-01 | 100.0% | 59.0% |
| 2e9wA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.39e-01 | 92.2% | 59.3% |
| 4xhzA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 35.0 | 3.17e-01 | 100.0% | 50.5% |
| 2druA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.85e-01 | 92.2% | 67.0% |
| 2rf5A00 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.52 | 46.0 | 3.39e-01 | 100.0% | 49.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3978227 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 49.0 | 5.03e-01 | 92.2% | 66.7% |
| 3399519 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.62 | 46.0 | 3.87e-01 | 100.0% | 46.2% |
| 4949137 | 321.1.1.1 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Gln-synt_C | 0.56 | 47.0 | 3.04e-01 | 96.1% | 74.3% |
| 3913414 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 39.0 | 3.44e-01 | 100.0% | 47.5% |
| 4578782 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 37.0 | 3.52e-01 | 92.2% | 58.9% |
| 3905969 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 36.0 | 3.43e-01 | 100.0% | 56.8% |
| 4459568 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.51 | 37.0 | 3.29e-01 | 100.0% | 52.2% |
| 3842165 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.51 | 33.0 | 3.04e-01 | 100.0% | 49.5% |
| 3258058 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.50 | 45.0 | 3.32e-01 | 100.0% | 61.0% |
D6
medium
residues 746-819
Domain cluster:
rep: gwa1_scaffold_0_prodigal-single.1__X__X__00005__D1265-1334