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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00404
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00404
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 64-168_202-250
Domain cluster:
rep: OP947159.1__WBC28288.1__DPMD02_24__00025__D7-135
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23980.2 best | Phage_tail_tube_init | 30.7 | 3.80e-07 | 91.6% | 47.7% |
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 58.0 | 6.18e-01 | 95.5% | 94.9% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 50.0 | 5.88e-01 | 95.5% | 100.0% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 31.0 | 3.77e-01 | 77.3% | 66.0% |
| 5fiiB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 29.0 | 3.82e-01 | 79.2% | 76.9% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 40.0 | 4.12e-01 | 94.8% | 64.6% |
| 6sulA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 33.0 | 3.90e-01 | 80.5% | 70.4% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 29.0 | 3.72e-01 | 82.5% | 71.9% |
| 3bm7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 31.0 | 3.71e-01 | 78.6% | 67.0% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 29.0 | 3.54e-01 | 76.0% | 64.4% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.63 | 34.0 | 4.11e-01 | 85.1% | 78.6% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 29.0 | 3.69e-01 | 82.5% | 73.0% |
| 3dxpA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 29.0 | 3.61e-01 | 92.2% | 71.0% |
| 3s1tA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 27.0 | 3.56e-01 | 79.9% | 75.0% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.61 | 37.0 | 4.08e-01 | 90.3% | 74.4% |
| 1zxqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 26.0 | 3.47e-01 | 84.4% | 72.9% |
| 1wi8A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 27.0 | 3.59e-01 | 87.7% | 79.5% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 29.0 | 3.95e-01 | 79.9% | 91.0% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 32.0 | 3.68e-01 | 83.8% | 69.8% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 32.0 | 3.45e-01 | 90.9% | 61.8% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 42.0 | 4.29e-01 | 94.8% | 80.3% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.56 | 28.0 | 3.50e-01 | 86.4% | 77.7% |
| 2l25A00 | 3.30.2000.20 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.55 | 44.0 | 4.58e-01 | 91.6% | 90.8% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.54 | 41.0 | 4.34e-01 | 93.5% | 89.7% |
| 2l04A00 | 2.60.40.1080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 26.0 | 3.28e-01 | 87.7% | 76.9% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.52 | 47.0 | 3.97e-01 | 97.4% | 74.5% |
| 3tx8A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 28.0 | 3.14e-01 | 81.2% | 67.5% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 29.0 | 3.33e-01 | 82.5% | 74.8% |
| 2fb0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 24.0 | 2.98e-01 | 80.5% | 69.1% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 25.0 | 3.06e-01 | 89.0% | 70.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.83 | 61.0 | 6.98e-01 | 93.5% | 100.0% |
| 4952909 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.78 | 44.0 | 5.32e-01 | 94.8% | 82.9% |
| 3965192 | 1.1.13.67 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 | 0.77 | 55.0 | 6.39e-01 | 90.3% | 99.1% |
| 3587074 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.77 | 54.0 | 6.32e-01 | 94.8% | 100.0% |
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.76 | 53.0 | 6.28e-01 | 92.9% | 100.0% |
| 4157825 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 59.0 | 6.38e-01 | 94.8% | 95.4% |
| 5004559 | 1.1.13.75 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube | 0.73 | 61.0 | 6.54e-01 | 89.6% | 100.0% |
| 3187986 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.72 | 32.0 | 3.82e-01 | 79.2% | 61.0% |
| 1444177 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 58.0 | 6.16e-01 | 95.5% | 94.9% |
| 4957562 | 1.1.13.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF6046 | 0.72 | 50.0 | 5.86e-01 | 93.5% | 99.1% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 56.0 | 6.07e-01 | 94.8% | 96.2% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.72 | 53.0 | 4.31e-01 | 96.1% | 43.0% |
| 5082881 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 56.0 | 6.09e-01 | 94.2% | 100.0% |
| 2101633 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.71 | 56.0 | 5.43e-01 | 94.8% | 74.9% |
| 3980535 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.71 | 59.0 | 6.25e-01 | 94.2% | 97.8% |
| 4034209 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.71 | 59.0 | 6.31e-01 | 92.9% | 100.0% |
| 4888732 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.70 | 56.0 | 5.62e-01 | 95.5% | 83.3% |
| 5062396 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.69 | 57.0 | 6.04e-01 | 86.4% | 98.6% |
| 5007131 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.69 | 34.0 | 4.28e-01 | 87.0% | 76.8% |
| 4888726 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.69 | 57.0 | 5.60e-01 | 94.8% | 81.7% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 58.0 | 5.83e-01 | 94.8% | 89.0% |
| 2642579 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.68 | 53.0 | 5.70e-01 | 96.1% | 96.9% |
| 2674670 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.68 | 55.0 | 5.31e-01 | 95.5% | 76.2% |
| 5011413 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.68 | 30.0 | 3.84e-01 | 79.9% | 70.0% |
| 2595159 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.67 | 55.0 | 5.43e-01 | 95.5% | 80.7% |
| 3976188 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.67 | 55.0 | 5.44e-01 | 100.0% | 81.2% |
| 3731186 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.65 | 31.0 | 4.50e-01 | 74.0% | 100.0% |
| 3687652 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.65 | 31.0 | 4.50e-01 | 75.3% | 100.0% |
| 3909822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 41.0 | 4.78e-01 | 88.3% | 89.1% |
| 4996950 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.64 | 31.0 | 3.42e-01 | 81.2% | 54.7% |
| 3991601 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.64 | 37.0 | 3.73e-01 | 89.6% | 54.7% |
| 164720 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.64 | 40.0 | 4.12e-01 | 94.8% | 64.6% |
| 3218711 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.64 | 28.0 | 3.37e-01 | 78.6% | 59.0% |
| 2771056 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.64 | 29.0 | 3.67e-01 | 79.2% | 68.8% |
| 3590380 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 57.0 | 5.41e-01 | 94.8% | 82.8% |
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.63 | 58.0 | 5.72e-01 | 100.0% | 93.9% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.62 | 53.0 | 5.48e-01 | 100.0% | 97.2% |
| 3259730 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.59 | 37.0 | 4.32e-01 | 94.8% | 88.2% |
| 4946616 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.57 | 27.0 | 3.34e-01 | 94.8% | 71.1% |
| 3428351 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.55 | 30.0 | 2.78e-01 | 87.7% | 40.0% |
| 4988254 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.54 | 42.0 | 4.02e-01 | 94.2% | 69.4% |
| 4014778 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.53 | 47.0 | 4.04e-01 | 94.2% | 67.2% |
| 3970985 | 304.124.1.9 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 | 0.53 | 44.0 | 4.58e-01 | 94.8% | 96.4% |
| 5067540 | 11.1.1.244 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_5 | 0.51 | 25.0 | 3.08e-01 | 85.1% | 73.7% |
| 4255072 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.50 | 36.0 | 3.34e-01 | 80.5% | 57.9% |