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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00487
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00487
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-75
Domain cluster:
rep: MN988468.1__QIG67309.1__EVB37_073__00072__D3-54
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bayE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.71 | 50.0 | 4.87e-01 | 75.9% | 76.3% |
| 2y43A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 49.0 | 4.20e-01 | 75.9% | 51.1% |
| 1wgmA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.69 | 50.0 | 4.56e-01 | 77.8% | 68.5% |
| 3hctA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 49.0 | 3.98e-01 | 79.6% | 65.4% |
| 4r7eA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.66 | 47.0 | 4.39e-01 | 77.8% | 68.1% |
| 1rmdA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 45.0 | 3.96e-01 | 75.9% | 57.0% |
| 1twfL00 | 2.20.28.30 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L | 0.64 | 41.0 | 4.39e-01 | 74.1% | 78.3% |
| 2o5hA00 | 1.10.3510.10 | Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like | 0.63 | 56.0 | 4.27e-01 | 100.0% | 52.3% |
| 4aybP00 | 2.20.28.30 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase ii, chain L | 0.61 | 40.0 | 4.31e-01 | 79.6% | 81.8% |
| 5dinA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.60 | 45.0 | 3.58e-01 | 83.3% | 60.8% |
| 2gnrA01 | 6.10.30.10 | Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › | 0.60 | 46.0 | 4.33e-01 | 94.4% | 68.1% |
| 4fo9A02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 49.0 | 3.92e-01 | 100.0% | 79.5% |
| 2kkxA00 | 3.30.40.80 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Effector protein NleG | 0.55 | 45.0 | 3.82e-01 | 100.0% | 82.4% |
| 1rniA01 | 3.30.720.160 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal | 0.54 | 45.0 | 4.21e-01 | 100.0% | 88.6% |
| 1vd4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 40.0 | 3.92e-01 | 88.9% | 75.8% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.53 | 42.0 | 3.61e-01 | 98.1% | 94.3% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 37.0 | 3.40e-01 | 81.5% | 85.5% |
| 1f2rI00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 43.0 | 3.58e-01 | 100.0% | 56.0% |
ECOD (76)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946890 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.84 | 47.0 | 4.27e-01 | 100.0% | 42.9% |
| 4946824 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 55.0 | 3.60e-01 | 74.1% | 21.4% |
| 4329890 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.77 | 47.0 | 3.34e-01 | 100.0% | 22.7% |
| 3625527 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.75 | 54.0 | 5.37e-01 | 75.9% | 74.5% |
| 4004118 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.75 | 51.0 | 3.36e-01 | 100.0% | 20.5% |
| 4029392 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.73 | 49.0 | 3.30e-01 | 100.0% | 20.5% |
| 4930596 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.73 | 47.0 | 3.24e-01 | 100.0% | 21.2% |
| 3488429 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.73 | 50.0 | 3.35e-01 | 100.0% | 21.1% |
| 3394822 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.73 | 50.0 | 3.31e-01 | 100.0% | 20.0% |
| 3669992 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.72 | 50.0 | 4.63e-01 | 74.1% | 65.7% |
| 3223233 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.72 | 50.0 | 3.17e-01 | 100.0% | 17.0% |
| 3485716 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.72 | 50.0 | 3.30e-01 | 100.0% | 20.5% |
| None | — | 0.72 | 50.0 | 3.31e-01 | 100.0% | 21.1% | |
| 4467359 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.72 | 46.0 | 3.19e-01 | 100.0% | 21.2% |
| 3550392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 50.0 | 3.31e-01 | 100.0% | 21.1% |
| 3444000 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.72 | 51.0 | 4.81e-01 | 75.9% | 69.2% |
| 4571011 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 45.0 | 5.03e-01 | 74.1% | 87.5% |
| 3936791 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 49.0 | 4.31e-01 | 74.1% | 55.3% |
| 3902772 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.71 | 50.0 | 4.65e-01 | 75.9% | 64.3% |
| 3400742 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.71 | 49.0 | 4.45e-01 | 74.1% | 58.7% |
| 3601774 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.71 | 49.0 | 4.34e-01 | 74.1% | 53.8% |
| 3622838 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 50.0 | 4.17e-01 | 75.9% | 49.5% |
| 3525671 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.70 | 50.0 | 4.85e-01 | 75.9% | 71.7% |
| 3532400 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.70 | 50.0 | 4.74e-01 | 75.9% | 72.3% |
| 3872106 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.70 | 50.0 | 4.98e-01 | 75.9% | 81.8% |
| 3571832 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 50.0 | 4.98e-01 | 75.9% | 81.8% |
| 3998594 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 49.0 | 4.49e-01 | 75.9% | 60.0% |
| 3196677 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.70 | 48.0 | 4.61e-01 | 74.1% | 67.7% |
| 3582511 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 49.0 | 4.07e-01 | 75.9% | 45.0% |
| 3324521 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.70 | 49.0 | 4.68e-01 | 75.9% | 67.7% |
| 3938245 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.69 | 49.0 | 3.18e-01 | 100.0% | 18.7% |
| 3805637 | 376.1.1.61 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 | 0.69 | 49.0 | 4.35e-01 | 75.9% | 56.2% |
| 3476530 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.69 | 49.0 | 4.72e-01 | 77.8% | 72.3% |
| 4027994 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.69 | 49.0 | 4.66e-01 | 75.9% | 69.2% |
| 3347073 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.69 | 50.0 | 4.12e-01 | 77.8% | 47.0% |
| 4025004 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.69 | 49.0 | 4.58e-01 | 77.8% | 68.6% |
| 3730202 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.69 | 51.0 | 4.65e-01 | 81.5% | 98.6% |
| 4013596 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 48.0 | 4.23e-01 | 75.9% | 51.8% |
| 4025085 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 48.0 | 4.48e-01 | 75.9% | 62.9% |
| 3998568 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.68 | 47.0 | 4.90e-01 | 74.1% | 80.0% |
| 3691750 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.68 | 48.0 | 3.56e-01 | 77.8% | 30.2% |
| 3532763 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.67 | 47.0 | 4.71e-01 | 75.9% | 81.8% |
| 4019034 | 375.1.1.22 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DNA_RNApol_7kD | 0.67 | 43.0 | 4.72e-01 | 85.2% | 90.0% |
| 3577683 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.67 | 47.0 | 4.25e-01 | 75.9% | 58.7% |
| 4306719 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.66 | 46.0 | 4.45e-01 | 75.9% | 81.5% |
| 3592443 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 53.0 | 3.82e-01 | 100.0% | 31.0% |
| 3848188 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.65 | 47.0 | 3.62e-01 | 77.8% | 53.6% |
| 3637247 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.65 | 46.0 | 4.38e-01 | 75.9% | 67.7% |
| 5000735 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 46.0 | 3.15e-01 | 100.0% | 22.9% |
| 3407621 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.65 | 45.0 | 4.55e-01 | 75.9% | 80.0% |
| 3620613 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 47.0 | 4.99e-01 | 83.3% | 95.6% |
| 3255511 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.64 | 46.0 | 3.09e-01 | 100.0% | 21.6% |
| 2487011 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 42.0 | 3.74e-01 | 74.1% | 46.2% |
| 3911109 | 386.1.1.290 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451_C | 0.63 | 54.0 | 4.75e-01 | 100.0% | 63.5% |
| 4541761 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.62 | 41.0 | 2.56e-01 | 74.1% | 11.8% |
| 4024182 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 39.0 | 3.59e-01 | 75.9% | 46.7% |
| 3720672 | 109.4.1.1591 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › U-box | 0.61 | 48.0 | 3.18e-01 | 96.3% | 58.6% |
| 4414600 | 375.1.1.46 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1g | 0.61 | 38.0 | 4.27e-01 | 70.4% | 100.0% |
| 2488218 | 375.1.1.46 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1g | 0.60 | 39.0 | 3.17e-01 | 74.1% | 32.4% |
| 3627228 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 44.0 | 4.58e-01 | 81.5% | 92.0% |
| 4546356 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 40.0 | 3.58e-01 | 79.6% | 47.1% |
| 4507638 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.58 | 40.0 | 2.94e-01 | 79.6% | 24.2% |
| 4221024 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 40.0 | 2.77e-01 | 79.6% | 19.5% |
| 5042462 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.58 | 40.0 | 2.96e-01 | 79.6% | 24.2% |
| 5046600 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.58 | 52.0 | 4.28e-01 | 100.0% | 57.8% |
| 5074538 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.58 | 45.0 | 4.41e-01 | 85.2% | 88.3% |
| 3472168 | 101.1.2.147 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC4_C | 0.57 | 52.0 | 3.82e-01 | 100.0% | 40.0% |
| 3492158 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.57 | 43.0 | 3.67e-01 | 83.3% | 57.8% |
| 3253680 | 376.1.1.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 | 0.57 | 48.0 | 4.25e-01 | 100.0% | 98.8% |
| 2722671 | 375.1.1.37 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon | 0.57 | 40.0 | 3.36e-01 | 75.9% | 45.9% |
| 5028348 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.55 | 37.0 | 2.60e-01 | 74.1% | 19.5% |
| 3640260 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.54 | 46.0 | 3.17e-01 | 100.0% | 47.3% |
| 3783244 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.53 | 45.0 | 3.06e-01 | 100.0% | 42.7% |
| 3670750 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 38.0 | 3.00e-01 | 77.8% | 36.7% |
| 3465479 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.53 | 37.0 | 2.47e-01 | 77.8% | 16.9% |
| 4982186 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 49.0 | 4.02e-01 | 100.0% | 62.2% |