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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00518
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00518
Identity
- Kingdom:
- phage
Quality
81.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-113_274-338
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wfxA02 | 3.20.170.30 | Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold › | 0.79 | 45.0 | 6.02e-01 | 76.1% | 100.0% |
| 3dnsA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.69 | 37.0 | 4.06e-01 | 98.1% | 62.6% |
| 2x5yA00 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.65 | 48.0 | 4.67e-01 | 76.1% | 69.6% |
| 4k6lG00 | 3.90.210.10 | Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A | 0.64 | 51.0 | 4.54e-01 | 83.0% | 69.2% |
| 1gs0A02 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.64 | 48.0 | 4.25e-01 | 76.7% | 75.3% |
| 4gv2A02 | 3.90.228.10 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.62 | 47.0 | 4.19e-01 | 78.0% | 75.2% |
| 2p0wA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 39.0 | 4.18e-01 | 99.4% | 81.2% |
| 1lrzA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 39.0 | 4.10e-01 | 97.5% | 76.2% |
| 2z0uA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 33.0 | 3.70e-01 | 81.1% | 73.4% |
| 1mk4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 37.0 | 3.78e-01 | 97.5% | 69.4% |
| 4k30A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 35.0 | 3.56e-01 | 96.9% | 66.7% |
| 2r7hB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 38.0 | 3.88e-01 | 98.1% | 73.6% |
| 3g8wB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 39.0 | 3.86e-01 | 97.5% | 72.0% |
| 2wpwC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 39.0 | 3.11e-01 | 99.4% | 36.9% |
| 3d3sA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 36.0 | 3.68e-01 | 97.5% | 69.2% |
| 3exnA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 39.0 | 3.98e-01 | 98.7% | 78.4% |
| 1xe4A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 35.0 | 3.55e-01 | 95.6% | 66.5% |
| 1rh8A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 34.0 | 3.57e-01 | 81.8% | 73.2% |
| 2jdcA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 35.0 | 3.66e-01 | 97.5% | 75.2% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.51 | 29.0 | 3.36e-01 | 93.1% | 75.0% |
| 1i12D00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 3.95e-01 | 98.7% | 80.9% |
| 4avaA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 36.0 | 3.46e-01 | 98.7% | 63.4% |
| 2oivA00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.51 | 37.0 | 3.63e-01 | 86.2% | 70.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5077692 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.78 | 48.0 | 5.92e-01 | 73.0% | 94.3% |
| 4303698 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.77 | 43.0 | 5.66e-01 | 79.2% | 94.7% |
| 4679144 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.76 | 43.0 | 5.60e-01 | 78.6% | 94.7% |
| 4296568 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.76 | 44.0 | 5.66e-01 | 76.7% | 96.8% |
| 3106804 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.75 | 46.0 | 5.71e-01 | 77.4% | 95.1% |
| 5060086 | 237.1.1.4 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA | 0.72 | 42.0 | 5.39e-01 | 79.2% | 97.9% |
| 3738698 | 213.1.1.6 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ | 0.71 | 35.0 | 3.99e-01 | 98.1% | 61.7% |
| 168869 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.69 | 37.0 | 4.06e-01 | 98.1% | 62.6% |
| 3879371 | 237.1.1.1 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PARP | 0.69 | 49.0 | 4.71e-01 | 73.0% | 68.9% |
| 3410782 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.69 | 45.0 | 4.52e-01 | 78.0% | 65.6% |
| 3665234 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.57 | 39.0 | 4.21e-01 | 96.9% | 83.1% |
| 3357649 | 213.1.1.5 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS | 0.57 | 43.0 | 4.29e-01 | 100.0% | 75.2% |
| 3335487 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.57 | 43.0 | 4.34e-01 | 100.0% | 77.5% |
| 4422829 | 327.5.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 | 0.57 | 29.0 | 3.65e-01 | 92.5% | 81.1% |
| 3517869 | 213.1.1.22 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N | 0.56 | 42.0 | 3.98e-01 | 100.0% | 64.2% |
| 4346973 | 213.1.1.2 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N | 0.56 | 43.0 | 4.21e-01 | 100.0% | 72.6% |
| 3793375 | 213.1.1.2 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N | 0.56 | 42.0 | 4.33e-01 | 99.4% | 82.0% |
| 3790600 | 213.1.1.2 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1,Hat1_N | 0.56 | 42.0 | 4.15e-01 | 99.4% | 74.5% |
| 3220519 | 213.1.1.22 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N | 0.55 | 42.0 | 4.21e-01 | 99.4% | 78.1% |
| 3586413 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.54 | 36.0 | 3.97e-01 | 93.1% | 83.8% |
| 165641 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 38.0 | 3.84e-01 | 97.5% | 73.2% |
| 3869259 | 213.1.1.22 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N | 0.53 | 41.0 | 4.22e-01 | 100.0% | 83.2% |
| 3389250 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 37.0 | 3.73e-01 | 97.5% | 72.9% |
| 4996084 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 35.0 | 3.59e-01 | 97.5% | 70.7% |
| 3516538 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 37.0 | 4.22e-01 | 96.9% | 100.0% |
| 5074431 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 38.0 | 3.92e-01 | 99.4% | 80.0% |
| 3683044 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 41.0 | 3.85e-01 | 99.4% | 67.5% |
| 3572500 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 40.0 | 3.88e-01 | 99.4% | 72.6% |
| 5053321 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.50 | 38.0 | 3.93e-01 | 98.7% | 82.7% |
| 3594893 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.50 | 38.0 | 3.92e-01 | 97.5% | 82.7% |
| 3801965 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.50 | 39.0 | 3.70e-01 | 97.5% | 67.9% |
| 4014702 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.50 | 40.0 | 3.82e-01 | 99.4% | 72.4% |
D2
high
residues 114-263
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.69 | 50.0 | 5.03e-01 | 100.0% | 74.5% |
| 3mnlB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 46.0 | 4.36e-01 | 95.3% | 57.7% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 39.0 | 4.41e-01 | 96.7% | 78.8% |
| 2fd5A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 41.0 | 4.37e-01 | 91.3% | 76.5% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 42.0 | 4.32e-01 | 97.3% | 80.0% |
| 3axjB01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.56 | 34.0 | 3.41e-01 | 84.0% | 56.8% |
| 1x9fD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 37.0 | 3.81e-01 | 88.0% | 71.4% |
| 3dcfA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 39.0 | 4.01e-01 | 96.0% | 77.5% |
| 4gc0A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.53 | 41.0 | 3.59e-01 | 80.0% | 78.3% |
| 6p6jB01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.53 | 47.0 | 3.78e-01 | 100.0% | 99.7% |
| 4xpwA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.52 | 40.0 | 4.29e-01 | 98.7% | 91.6% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 32.0 | 3.65e-01 | 82.0% | 83.6% |
| 3dyjA02 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.51 | 43.0 | 4.37e-01 | 89.3% | 98.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010237 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.66 | 36.0 | 3.87e-01 | 71.3% | 60.8% |
| 3781683 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.56 | 50.0 | 4.15e-01 | 97.3% | 61.1% |
| 4066156 | 1075.1.1.20 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane+PDR_CDR | 0.56 | 51.0 | 4.21e-01 | 99.3% | 63.0% |
| 5059666 | 1076.1.1.0 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related | 0.56 | 46.0 | 4.08e-01 | 96.0% | 60.6% |
| 3573786 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.54 | 43.0 | 3.94e-01 | 100.0% | 63.0% |
| 4347866 | 3896.1.1.1 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase › CTP_transf_1 | 0.52 | 47.0 | 3.80e-01 | 98.0% | 69.1% |
| 5081366 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.52 | 41.0 | 4.00e-01 | 100.0% | 74.5% |
| 3545528 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.52 | 39.0 | 3.49e-01 | 80.7% | 54.1% |
| 4946740 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.52 | 42.0 | 3.88e-01 | 98.0% | 65.4% |
| 3476494 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.50 | 42.0 | 4.36e-01 | 98.7% | 95.7% |
| 5014336 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.50 | 40.0 | 4.12e-01 | 99.3% | 89.7% |