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RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00530
Bact-VirRifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00530
Identity
- Kingdom:
- phage
Quality
79.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 26-79
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q00B00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.65 | 55.0 | 4.36e-01 | 100.0% | 70.5% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.63 | 51.0 | 3.68e-01 | 90.7% | 75.3% |
| 1rsoB00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.60 | 40.0 | 4.03e-01 | 87.0% | 67.9% |
| 7dswA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.60 | 44.0 | 2.69e-01 | 83.3% | 14.8% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 50.0 | 3.73e-01 | 100.0% | 83.8% |
| 2e8gA01 | 1.20.1440.150 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.57 | 47.0 | 3.79e-01 | 100.0% | 80.6% |
| 5aioA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 40.0 | 3.02e-01 | 96.3% | 27.1% |
| 6h9xA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.57 | 42.0 | 3.52e-01 | 90.7% | 44.1% |
| 2c2jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.56 | 45.0 | 3.25e-01 | 90.7% | 31.5% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 47.0 | 4.33e-01 | 100.0% | 72.0% |
| 5dicA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.55 | 46.0 | 3.73e-01 | 100.0% | 52.2% |
| 1grjA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.55 | 44.0 | 4.05e-01 | 92.6% | 73.0% |
| 3qilB00 | 1.25.40.730 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 35.0 | 3.04e-01 | 98.1% | 37.1% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.54 | 44.0 | 3.33e-01 | 100.0% | 38.5% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.52 | 42.0 | 3.72e-01 | 90.7% | 63.0% |
| 6bs3B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 2.82e-01 | 100.0% | 43.6% |
| 4a15A03 | 1.10.275.40 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.52 | 44.0 | 3.37e-01 | 100.0% | 57.1% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.52 | 42.0 | 3.23e-01 | 92.6% | 42.3% |
| 3ceiA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.52 | 42.0 | 4.00e-01 | 92.6% | 77.8% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 44.0 | 4.23e-01 | 100.0% | 95.4% |
| 1dgfA03 | 1.20.1370.60 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.51 | 40.0 | 3.34e-01 | 96.3% | 60.5% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.51 | 39.0 | 3.60e-01 | 90.7% | 93.4% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.50 | 36.0 | 3.12e-01 | 81.5% | 62.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3515056 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 41.0 | 2.96e-01 | 79.6% | 40.0% |
| 4964803 | 2004.1.1.1220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF26510 | 0.57 | 47.0 | 3.15e-01 | 100.0% | 23.1% |
| 3211477 | 603.2.1.14 ↗ | alpha bundles › STAT-like › STAT › STAT › STATB_N | 0.57 | 49.0 | 3.64e-01 | 100.0% | 64.1% |
| 4484289 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.56 | 47.0 | 3.31e-01 | 100.0% | 40.0% |
| 3591222 | 604.1.1.198 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › BAG | 0.54 | 44.0 | 3.68e-01 | 90.7% | 51.6% |
| 3498046 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 44.0 | 2.95e-01 | 100.0% | 33.5% |
| 3366651 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.53 | 45.0 | 3.23e-01 | 100.0% | 42.3% |
| 3266867 | 109.4.1.273 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI4KB-PIK1_PIK | 0.53 | 44.0 | 3.56e-01 | 100.0% | 46.1% |
| 3491214 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 44.0 | 3.66e-01 | 98.1% | 81.9% |
| 5021829 | 605.6.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like | 0.52 | 40.0 | 3.48e-01 | 87.0% | 84.4% |