RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1XX__00533

Bact-Vir

RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00533

Identity

92.1 mean pLDDT

Singleton — not in a non-trivial cluster

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-77

PDB

Domain cluster: rep: S20_GE20_scaffold_13766_prodigal-single.1__X__X__00215__D9-57

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01844.30 best	HNH	26.0	1.20e-05	51.5%	66.0%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kiwA01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.52	40.0	3.80e-01	88.2%	97.7%
4tq1A03	1.10.246.190	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Autophagy protein Apg5, helix rich domain	0.51	35.0	3.72e-01	80.9%	86.2%
7powA01	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.51	39.0	2.92e-01	86.8%	82.3%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5044573	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	37.0	3.40e-01	70.6%	90.0%
3784054	130.1.1.1 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP	0.54	39.0	3.62e-01	77.9%	78.9%
3737171	509.1.1.1 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH	0.54	38.0	3.96e-01	73.5%	98.3%
3707222	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.53	33.0	3.63e-01	70.6%	78.2%
3942711	10.12.1.104 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding, Cupin_2	0.53	40.0	3.14e-01	82.4%	65.2%
3926547	196.1.1.1 ↗	alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS	0.50	36.0	2.99e-01	79.4%	76.4%