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Rifle_16ft_4_minimus_37632_prodigal-single.1__X__X__00374
Bact-VirRifle_16ft_4_minimus_37632_prodigal-single.1__X__X__00374
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-80
Domain cluster:
rep: BML_coassembly_scaffold_37_prodigal-single.1__X__X__00048__D6-77
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q7sA00 | 3.40.1490.10 | Alpha Beta › 3-Layer(aba) Sandwich › Bit1 › Bit1 | 0.73 | 38.0 | 3.20e-01 | 82.7% | 31.6% |
| 7qqfA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 49.0 | 3.22e-01 | 86.7% | 19.0% |
| 5deqB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 37.0 | 3.62e-01 | 70.7% | 54.2% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 3.97e-01 | 85.3% | 50.0% |
| 3u1dB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 49.0 | 3.93e-01 | 97.3% | 45.5% |
| 6pcoC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 43.0 | 3.60e-01 | 84.0% | 43.2% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 3.38e-01 | 80.0% | 38.3% |
| 3u1nB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.56 | 47.0 | 3.05e-01 | 92.0% | 70.1% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.29e-01 | 82.7% | 42.5% |
| 3wltA02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.56 | 38.0 | 2.88e-01 | 72.0% | 93.5% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 41.0 | 3.44e-01 | 81.3% | 56.5% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 41.0 | 2.81e-01 | 82.7% | 96.2% |
| 2yqrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.54 | 40.0 | 3.69e-01 | 82.7% | 79.6% |
| 3rsnA00 | 3.90.980.20 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › | 0.53 | 36.0 | 2.86e-01 | 77.3% | 32.1% |
| 3d3lA02 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 35.0 | 3.50e-01 | 76.0% | 66.3% |
| 6fh1B01 | 3.30.590.10 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain | 0.51 | 41.0 | 3.04e-01 | 93.3% | 76.0% |
| 3ke3A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 40.0 | 3.48e-01 | 97.3% | 56.2% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003349 | 101.1.2.921 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7109 | 0.70 | 48.0 | 4.33e-01 | 94.7% | 53.0% |
| 3277850 | 2501.1.1.1 ↗ | a/b three-layered sandwiches › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › Peptidyl-tRNA hydrolase II › PTH2 | 0.69 | 33.0 | 3.10e-01 | 82.7% | 35.8% |
| 3738271 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.63 | 45.0 | 3.98e-01 | 82.7% | 51.8% |
| 5010472 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 43.0 | 3.96e-01 | 82.7% | 54.0% |
| 4951675 | 101.1.2.530 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 | 0.63 | 43.0 | 3.99e-01 | 84.0% | 54.0% |
| 4955510 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 57.0 | 4.52e-01 | 100.0% | 51.3% |
| 3801946 | 101.1.2.462 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7647 | 0.62 | 48.0 | 3.75e-01 | 81.3% | 39.4% |
| 4997952 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 42.0 | 4.07e-01 | 73.3% | 62.4% |
| 4954707 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.60 | 40.0 | 3.71e-01 | 77.3% | 53.7% |
| 3237013 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.60 | 41.0 | 3.48e-01 | 86.7% | 41.5% |
| 5037625 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 43.0 | 3.92e-01 | 92.0% | 55.2% |
| 3201891 | 101.1.2.535 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25889 | 0.59 | 46.0 | 4.31e-01 | 97.3% | 68.9% |
| 4978826 | 873.1.1.18 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HTH_24 | 0.59 | 38.0 | 2.72e-01 | 72.0% | 22.4% |
| 3280969 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.58 | 39.0 | 3.55e-01 | 72.0% | 51.0% |
| 4990676 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.58 | 41.0 | 3.69e-01 | 82.7% | 51.8% |
| 4996226 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.58 | 38.0 | 3.49e-01 | 84.0% | 51.0% |
| 3727445 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 37.0 | 3.36e-01 | 70.7% | 46.7% |
| 4017175 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.58 | 40.0 | 2.80e-01 | 81.3% | 22.0% |
| 3742058 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 39.0 | 2.41e-01 | 70.7% | 66.6% |
| 5078033 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.56 | 41.0 | 3.79e-01 | 94.7% | 60.0% |
| 4954006 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.56 | 41.0 | 3.79e-01 | 81.3% | 60.0% |
| 3891201 | 2002.1.2.9 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › Hypothetical protein Cthe_0052 › Glyco_hydro_31_2nd | 0.56 | 44.0 | 3.51e-01 | 92.0% | 39.9% |
| 3676524 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.56 | 49.0 | 4.11e-01 | 100.0% | 62.3% |
| 4971711 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 3.94e-01 | 96.0% | 56.0% |
| 4969948 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.02e-01 | 92.0% | 62.9% |
| 4950787 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.55 | 44.0 | 4.15e-01 | 97.3% | 71.6% |
| 3164764 | 2008.1.1.168 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30184 | 0.55 | 41.0 | 3.95e-01 | 78.7% | 71.8% |
| 3827266 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 47.0 | 3.85e-01 | 98.7% | 63.4% |
| 3724779 | 101.1.2.236 ↗ | alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD | 0.54 | 36.0 | 2.73e-01 | 82.7% | 29.4% |
| 5082509 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.54 | 46.0 | 3.85e-01 | 94.7% | 67.7% |
| 3383835 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.54 | 36.0 | 3.09e-01 | 73.3% | 42.5% |
| 4669204 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 2.41e-01 | 76.0% | 72.7% |
| 4953109 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.53 | 39.0 | 3.66e-01 | 94.7% | 62.1% |
| 3713148 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.97e-01 | 93.3% | 71.6% |
| 3243265 | 5001.1.1.25 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Sru | 0.53 | 43.0 | 2.88e-01 | 90.7% | 58.7% |
| 3223457 | 101.1.2.661 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_9, POLR3C_WHD | 0.53 | 41.0 | 2.78e-01 | 84.0% | 55.0% |
| 3753304 | 5001.1.1.43 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › V1R | 0.53 | 45.0 | 3.05e-01 | 97.3% | 62.5% |
| 3630104 | 192.24.1.6 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.52 | 41.0 | 2.60e-01 | 84.0% | 66.8% |
| 4993772 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.52 | 44.0 | 3.93e-01 | 94.7% | 66.7% |
| 3769334 | 5001.1.1.43 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › V1R | 0.52 | 44.0 | 2.98e-01 | 98.7% | 63.1% |
| 3479163 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.49e-01 | 97.3% | 51.5% |
| 4673494 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.51 | 40.0 | 2.90e-01 | 94.7% | 100.0% |
| 3242853 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.50 | 43.0 | 2.96e-01 | 97.3% | 71.7% |
| 3575291 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.50 | 38.0 | 2.95e-01 | 81.3% | 91.8% |
| 5062917 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 43.0 | 3.67e-01 | 98.7% | 56.9% |
| 4135068 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 38.0 | 2.38e-01 | 81.3% | 71.8% |