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Rifle_16ft_4_minimus_37632_prodigal-single.1__X__X__00515

Bact-Vir

Rifle_16ft_4_minimus_37632_prodigal-single.1__X__X__00515

Identity

Kingdom:
phage

Quality

78.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-88
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.82 62.0 6.94e-01 80.3% 100.0%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 58.0 6.38e-01 80.3% 95.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.65 45.0 4.82e-01 71.1% 95.2%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.37e-01 77.6% 62.9%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.65 55.0 4.66e-01 97.4% 88.7%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 5.00e-01 82.9% 85.7%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 43.0 3.22e-01 72.4% 70.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.75e-01 98.7% 93.8%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 50.0 4.72e-01 100.0% 78.5%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 42.0 3.47e-01 75.0% 78.9%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 43.0 3.93e-01 85.5% 57.4%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 43.0 3.34e-01 89.5% 34.9%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.62e-01 81.6% 91.3%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 44.0 3.61e-01 81.6% 81.0%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 41.0 3.33e-01 73.7% 81.5%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.99e-01 82.9% 69.2%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 41.0 3.24e-01 75.0% 84.9%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 49.0 3.95e-01 93.4% 100.0%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.58 40.0 2.66e-01 80.3% 17.8%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.17e-01 80.3% 37.7%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.57 48.0 4.56e-01 100.0% 80.2%
1va0B02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 50.0 4.30e-01 100.0% 84.7%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 49.0 3.86e-01 98.7% 75.8%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 44.0 3.91e-01 85.5% 97.4%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 49.0 3.34e-01 100.0% 69.0%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 39.0 3.29e-01 75.0% 96.5%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 48.0 3.83e-01 98.7% 52.2%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 38.0 2.53e-01 71.1% 25.7%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 43.0 3.82e-01 88.2% 95.8%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.40e-01 76.3% 95.2%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 40.0 3.31e-01 81.6% 74.5%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 42.0 3.73e-01 96.1% 56.5%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.41e-01 89.5% 80.6%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.54 36.0 3.16e-01 100.0% 43.1%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 38.0 3.18e-01 76.3% 89.1%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 46.0 3.08e-01 100.0% 60.7%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.36e-01 94.7% 91.8%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.25e-01 82.9% 74.0%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 2.90e-01 78.9% 71.9%
3ty4B00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.52 41.0 2.71e-01 88.2% 57.4%
7ox5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.57e-01 82.9% 72.8%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.82e-01 88.2% 81.6%
2hlcA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 44.0 3.82e-01 100.0% 69.8%
7mjrA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 3.34e-01 86.8% 96.9%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.50 41.0 3.17e-01 94.7% 81.3%
ECOD (88)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.84 69.0 6.76e-01 86.8% 97.5%
4574546 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.82 65.0 6.98e-01 82.9% 98.5%
3591183 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 61.0 5.41e-01 80.3% 95.2%
4104821 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 63.0 6.42e-01 85.5% 85.3%
4084850 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 64.0 6.90e-01 86.8% 100.0%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 61.0 6.61e-01 82.9% 95.4%
4216845 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 65.0 6.70e-01 88.2% 91.8%
4185009 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 62.0 6.68e-01 84.2% 96.9%
4088209 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 62.0 6.69e-01 85.5% 98.5%
4248855 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 64.0 6.53e-01 88.2% 91.9%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.78 60.0 6.10e-01 81.6% 89.3%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 63.0 6.66e-01 86.8% 95.7%
4226934 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 63.0 6.72e-01 86.8% 100.0%
4342110 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 65.0 6.64e-01 94.7% 93.2%
4261362 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 63.0 6.55e-01 86.8% 94.3%
4124780 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 64.0 6.59e-01 94.7% 93.2%
4225787 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 62.0 5.60e-01 85.5% 70.0%
4459365 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 63.0 6.25e-01 88.2% 86.3%
4205717 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 63.0 6.26e-01 88.2% 83.7%
4429329 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 61.0 6.56e-01 86.8% 100.0%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.76 60.0 5.91e-01 84.2% 96.2%
4140958 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 62.0 6.33e-01 86.8% 94.7%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 62.0 6.45e-01 86.8% 95.7%
4093911 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 64.0 6.44e-01 89.5% 92.0%
4584943 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 63.0 6.54e-01 88.2% 95.7%
4252954 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 61.0 6.37e-01 86.8% 95.7%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 61.0 6.39e-01 86.8% 94.3%
4157193 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 63.0 6.53e-01 89.5% 97.1%
4347922 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 56.0 6.25e-01 81.6% 100.0%
4208040 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 65.0 6.63e-01 94.7% 95.9%
4212091 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 58.0 6.22e-01 82.9% 95.4%
4122525 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 65.0 6.56e-01 94.7% 93.3%
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 60.0 6.25e-01 88.2% 94.3%
4387099 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 59.0 5.83e-01 84.2% 96.2%
4299932 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 57.0 6.13e-01 82.9% 95.4%
4264671 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 61.0 6.01e-01 88.2% 85.0%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 5.97e-01 89.5% 91.8%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 57.0 6.13e-01 84.2% 96.9%
4515863 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 62.0 5.39e-01 89.5% 66.4%
4286562 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 57.0 6.17e-01 84.2% 96.9%
4269844 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 60.0 6.28e-01 89.5% 98.6%
4069793 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 59.0 6.10e-01 88.2% 94.3%
4118552 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 64.0 6.49e-01 94.7% 96.0%
4282868 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 57.0 5.96e-01 84.2% 95.7%
4988761 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.72 58.0 5.48e-01 86.8% 95.6%
4977702 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.71 51.0 4.94e-01 82.9% 67.1%
5041801 4.15.1.0 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.71 58.0 5.62e-01 88.2% 94.1%
3603402 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.71 57.0 5.43e-01 86.8% 93.3%
5043132 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.71 56.0 5.46e-01 85.5% 95.3%
4964819 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.71 58.0 5.12e-01 89.5% 91.8%
4956695 4.15.1.0 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.70 55.0 5.45e-01 82.9% 96.2%
5042597 4.15.1.0 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.70 57.0 5.41e-01 89.5% 93.3%
5010832 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.70 56.0 5.33e-01 86.8% 97.8%
4982722 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.69 55.0 5.30e-01 85.5% 95.3%
4992755 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.69 56.0 5.37e-01 90.8% 95.6%
3854638 4.1.1.131 beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.68 48.0 4.41e-01 81.6% 56.0%
3927795 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.38e-01 76.3% 100.0%
4253108 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.68 52.0 4.95e-01 86.8% 69.3%
4885908 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 51.0 4.68e-01 86.8% 62.2%
3782050 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.67 56.0 4.64e-01 92.1% 90.4%
3726709 9.15.1.1 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.66 57.0 4.08e-01 100.0% 92.9%
3472898 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.65 53.0 4.54e-01 88.2% 95.0%
3459099 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.65 50.0 4.53e-01 82.9% 72.4%
4995699 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 48.0 4.99e-01 78.9% 88.6%
3928136 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.29e-01 78.9% 100.0%
5046193 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.64 49.0 4.68e-01 86.8% 68.9%
4987744 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 57.0 4.66e-01 100.0% 66.7%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.62 48.0 4.43e-01 85.5% 89.0%
4367301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.69e-01 71.1% 96.4%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.92e-01 85.5% 90.0%
3632407 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.06e-01 82.9% 82.9%
3981111 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.58 47.0 3.78e-01 89.5% 67.1%
3801890 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 41.0 3.08e-01 75.0% 82.0%
3967781 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 44.0 3.52e-01 84.2% 50.6%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.47e-01 84.2% 87.1%
3790897 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.70e-01 100.0% 79.0%
1069946 219.1.1.52 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Tae4 0.57 47.0 3.81e-01 100.0% 44.8%
3841414 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 44.0 4.58e-01 100.0% 94.3%
3187489 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.55 41.0 2.87e-01 80.3% 35.8%
3566074 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 47.0 3.22e-01 100.0% 79.3%
3382767 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.53 46.0 3.06e-01 100.0% 63.3%
3472537 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 45.0 2.96e-01 100.0% 68.9%
3926080 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 46.0 3.11e-01 100.0% 63.2%
3922426 4.1.1.363 beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.53 45.0 3.97e-01 100.0% 93.3%
3460619 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.52 44.0 2.91e-01 100.0% 76.1%
3407408 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 40.0 3.47e-01 86.8% 96.0%
3449844 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.51 43.0 3.18e-01 94.7% 44.9%
3171545 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.51 34.0 2.25e-01 71.1% 16.7%