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Ring_domain_containing_protein

Euk-Vir

Pandoravirus_quercus

Ring_domain_containing_protein__YP_009483146__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009483146 ↗
Protein ID:
Ring_domain_containing_protein
Kingdom:
euk

Quality

52.5 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 365-494
PDB
Domain cluster: rep: ubiquitin_domain-containing_protein__YP_009119676__Pandoravirus_inopinatum__1605721__D47-170
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 33.0 4.79e-01 94.6% 84.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 35.0 4.64e-01 90.8% 82.2%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 30.0 4.74e-01 93.1% 100.0%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.73 37.0 3.84e-01 80.8% 52.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 32.0 4.52e-01 93.1% 88.3%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 33.0 4.45e-01 95.4% 81.2%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.72 28.0 4.53e-01 93.1% 97.9%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 33.0 4.84e-01 91.5% 100.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.72 35.0 3.77e-01 80.8% 53.1%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 32.0 4.76e-01 95.4% 98.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 29.0 4.39e-01 90.8% 94.2%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 30.0 4.37e-01 93.8% 89.8%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 35.0 3.64e-01 80.8% 50.8%
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 35.0 3.81e-01 80.8% 58.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 36.0 4.40e-01 92.3% 79.8%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 33.0 3.84e-01 97.7% 71.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.80e-01 96.9% 92.7%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 31.0 3.24e-01 93.8% 51.2%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.59 35.0 3.81e-01 82.3% 70.6%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.57 32.0 3.59e-01 93.8% 69.6%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 34.0 4.02e-01 88.5% 85.6%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 33.0 3.86e-01 97.7% 79.8%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 33.0 3.68e-01 97.7% 73.8%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.44e-01 96.9% 84.3%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 34.0 3.85e-01 84.6% 84.0%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 35.0 3.10e-01 93.8% 47.6%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.52 41.0 3.62e-01 83.1% 94.7%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 32.0 3.56e-01 97.7% 77.5%
3c5iD01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 29.0 3.58e-01 96.9% 93.4%
3szeA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 40.0 3.07e-01 86.2% 92.5%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 32.0 5.11e-01 91.5% 100.0%
3875218 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.78 33.0 4.72e-01 94.6% 81.5%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.78 33.0 4.88e-01 94.6% 89.7%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.78 33.0 4.52e-01 94.6% 75.7%
3784334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 34.0 4.91e-01 93.8% 90.0%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.77 33.0 4.98e-01 93.8% 96.4%
4957350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 35.0 4.92e-01 71.5% 89.2%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 31.0 4.94e-01 94.6% 100.0%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.76 33.0 4.87e-01 94.6% 91.5%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.75 33.0 4.83e-01 93.1% 93.1%
4368811 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.75 32.0 4.78e-01 90.8% 94.5%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 33.0 4.85e-01 92.3% 94.8%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.74 34.0 4.77e-01 93.8% 89.2%
4525683 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.73 35.0 3.73e-01 86.2% 50.0%
4147290 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.73 32.0 4.40e-01 91.5% 81.5%
4954284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 32.0 4.59e-01 93.8% 90.0%
3768094 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 38.0 4.18e-01 87.7% 62.9%
3976863 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.71 34.0 3.82e-01 87.7% 56.2%
3963760 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.71 38.0 3.70e-01 80.0% 46.9%
5064457 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.71 34.0 4.59e-01 97.7% 85.7%
5065747 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.70 36.0 4.22e-01 76.9% 70.0%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 33.0 4.80e-01 74.6% 98.3%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.70 36.0 4.06e-01 93.1% 64.0%
2772566 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.70 34.0 3.68e-01 86.2% 52.6%
3854862 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 37.0 4.28e-01 87.7% 70.5%
3387378 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 36.0 4.50e-01 93.1% 80.0%
3230083 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 37.0 4.34e-01 87.7% 74.4%
3597513 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 30.0 4.60e-01 99.2% 100.0%
3586953 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 32.0 4.56e-01 93.8% 92.3%
4261492 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.67 34.0 3.38e-01 93.8% 45.9%
3709029 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 32.0 4.50e-01 92.3% 98.3%
3602123 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.66 32.0 4.11e-01 97.7% 78.2%
5016579 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 33.0 4.12e-01 97.7% 78.5%
3801650 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 38.0 4.58e-01 93.8% 84.4%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 40.0 4.94e-01 92.3% 98.8%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 41.0 4.98e-01 94.6% 96.5%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.65 35.0 4.14e-01 76.9% 75.6%
3698630 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.65 34.0 3.74e-01 97.7% 61.9%
5069810 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 32.0 4.01e-01 96.9% 77.5%
1171020 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 33.0 3.81e-01 97.7% 66.7%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 35.0 4.41e-01 90.8% 90.0%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 33.0 4.38e-01 92.3% 95.7%
5057445 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.62 35.0 4.25e-01 99.2% 84.7%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 40.0 4.78e-01 92.3% 98.8%
4645538 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.62 30.0 3.90e-01 94.6% 81.3%
4015238 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.62 30.0 3.12e-01 94.6% 48.0%
3243255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 33.0 4.27e-01 98.5% 92.0%
4281699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 35.0 4.44e-01 92.3% 98.7%
4680746 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.60 30.0 3.90e-01 94.6% 84.0%
5055336 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.60 33.0 3.98e-01 97.7% 78.9%
4952498 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 34.0 3.90e-01 93.8% 73.7%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 34.0 4.46e-01 91.5% 100.0%
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 36.0 4.53e-01 90.0% 98.8%
4945827 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.59 33.0 3.94e-01 97.7% 80.0%
4952455 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.59 33.0 3.97e-01 97.7% 80.9%
552 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.59 35.0 3.81e-01 82.3% 70.6%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 3.62e-01 92.3% 45.3%
3214653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.67e-01 93.8% 100.0%
3354387 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.57 35.0 4.28e-01 73.1% 95.3%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.56 35.0 4.30e-01 95.4% 96.5%
3822850 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.56 33.0 3.77e-01 97.7% 77.0%
3584246 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.55 38.0 4.21e-01 93.8% 88.5%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 33.0 4.00e-01 92.3% 91.8%
3515143 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.51 40.0 4.10e-01 96.2% 85.6%
D2 medium residues 495-578
PDB
Domain cluster: rep: IMGVR_UViG_3300021400_004370-3300021400-Ga0224422_126570053__D12-86