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Ring_finger_protein

Euk-Vir

Pandoravirus_quercus

Ring_finger_protein__YP_009482975__Pandoravirus_quercus__2107709

Identity

Accession:
YP_009482975 ↗
Protein ID:
Ring_finger_protein
Kingdom:
euk

Quality

53.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_quercus

TaxID: 2107709

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 246-314
PDB
Domain cluster: rep: ubiquitin_E3_ligase_ICP0__YP_068377__Suid_alphaherpesvirus_1__10345__D13-62
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13639.13 best zf-RING_2 32.5 1.20e-07 42.0% 63.6%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aycA02 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.86 55.0 5.10e-01 78.3% 54.2%
2csyA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.83 56.0 6.03e-01 81.2% 80.0%
2ma6A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.82 49.0 5.23e-01 75.4% 68.9%
5dinA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.81 53.0 4.35e-01 78.3% 39.2%
4wz0A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.79 54.0 4.57e-01 81.2% 45.0%
2bayE00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.78 49.0 5.22e-01 75.4% 74.6%
1rmdA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.75 53.0 4.92e-01 81.2% 59.3%
2cklA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.75 56.0 4.91e-01 81.2% 55.1%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.72 47.0 4.62e-01 76.8% 62.2%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3196677 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.93 54.0 5.59e-01 72.5% 63.1%
3276176 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.92 52.0 5.60e-01 71.0% 66.7%
3907135 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.90 54.0 5.07e-01 75.4% 52.5%
3324521 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.89 55.0 5.72e-01 76.8% 67.7%
3573352 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.88 57.0 5.71e-01 76.8% 65.7%
3398581 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.88 57.0 5.13e-01 78.3% 51.1%
3765926 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.87 58.0 4.60e-01 78.3% 37.6%
3817884 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.86 55.0 5.76e-01 78.3% 71.4%
3708262 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.86 57.0 5.10e-01 76.8% 52.2%
3913667 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.85 56.0 4.44e-01 78.3% 36.2%
3789440 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.85 54.0 4.26e-01 76.8% 34.6%
3250827 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.85 56.0 5.46e-01 78.3% 62.7%
3806101 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.85 55.0 5.89e-01 75.4% 76.7%
3786153 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.85 56.0 4.59e-01 78.3% 40.9%
4027158 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.85 57.0 4.76e-01 81.2% 43.6%
1413892 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.84 54.0 4.16e-01 81.2% 33.3%
4025085 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.84 53.0 5.28e-01 76.8% 62.9%
3790610 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.84 50.0 5.22e-01 75.4% 64.6%
1218236 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.84 54.0 4.87e-01 81.2% 51.1%
3574496 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.84 57.0 5.22e-01 81.2% 56.5%
3490882 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.84 58.0 4.81e-01 81.2% 44.5%
3848188 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.84 55.0 4.42e-01 78.3% 37.6%
3849195 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.84 55.0 4.20e-01 79.7% 32.4%
4011007 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.84 56.0 4.70e-01 78.3% 43.6%
3993815 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.83 54.0 4.68e-01 75.4% 46.0%
3821195 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.83 57.0 5.06e-01 81.2% 51.6%
3413488 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.83 53.0 5.29e-01 81.2% 64.3%
3596219 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.83 54.0 4.90e-01 76.8% 52.3%
3481026 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.83 57.0 5.14e-01 79.7% 54.4%
3274573 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.83 55.0 4.72e-01 78.3% 47.0%
2138158 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.83 55.0 4.39e-01 78.3% 37.9%
3494512 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.82 58.0 5.62e-01 81.2% 66.7%
4028097 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.82 56.0 5.74e-01 81.2% 72.1%
3266775 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.82 52.0 5.43e-01 78.3% 69.2%
3842229 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.82 58.0 5.32e-01 81.2% 58.8%
3215339 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.82 54.0 5.00e-01 81.2% 55.3%
3311630 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.82 57.0 5.17e-01 79.7% 55.6%
3242811 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.82 54.0 4.68e-01 81.2% 47.0%
3276478 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.81 56.0 5.13e-01 79.7% 57.6%
3246456 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.81 58.0 5.84e-01 81.2% 74.3%
3687508 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.80 55.0 4.44e-01 81.2% 39.2%
4024500 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.80 56.0 4.87e-01 81.2% 50.0%
3577683 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.80 51.0 4.96e-01 81.2% 60.0%
3653237 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.80 56.0 5.42e-01 79.7% 66.7%
3637247 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.80 51.0 5.25e-01 79.7% 69.2%
1489496 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.79 54.0 4.70e-01 81.2% 48.5%
3882753 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.79 55.0 4.31e-01 81.2% 37.0%
3779926 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.78 54.0 5.30e-01 84.1% 67.1%
3269312 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 53.0 5.00e-01 78.3% 60.0%
4012910 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 50.0 4.59e-01 76.8% 51.1%
3601774 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.77 52.0 4.95e-01 79.7% 60.0%
3266881 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.77 54.0 5.05e-01 82.6% 60.0%
3263303 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.76 54.0 4.71e-01 81.2% 51.0%
3915825 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.75 56.0 4.95e-01 81.2% 56.8%
3519350 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.74 46.0 4.78e-01 73.9% 67.7%
3480920 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.73 56.0 4.60e-01 81.2% 47.8%
3260447 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 51.0 4.06e-01 79.7% 38.5%
3427173 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.64 52.0 5.34e-01 94.2% 92.3%