Rnase_III

Euk-Vir

Paramecium_bursaria_Chlorella_virus_1

Rnase_III__NP_048820__Paramecium_bursaria_Chlorella_virus_1__10506

Identity

78.4 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Chlorovirus› Paramecium_bursaria_Chlorella_virus_1

TaxID: 10506

View cluster (30 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 202-273

PDB

Domain cluster: rep: ribonuclease_III__YP_007354453__Acanthamoeba_polyphaga_moumouvirus__1269028__D463-528

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00035.33 best	dsrm	54.6	1.80e-14	91.7%	97.0%

D2 medium residues 45-116_129-146

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00636.32 best	Ribonuclease_3	30.1	9.80e-07	42.2%	32.4%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2eb1C00	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.87	82.0	6.44e-01	98.9%	60.9%
3rv0C02	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.80	67.0	5.58e-01	87.8%	59.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4108975	171.1.1.4 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3	0.89	83.0	6.79e-01	100.0%	68.4%
4544296	171.1.1.4 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3	0.89	81.0	6.65e-01	96.7%	68.0%
3196009	171.1.1.1 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3	0.87	79.0	5.96e-01	96.7%	53.0%
4160692	171.1.1.1 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3	0.87	80.0	5.79e-01	97.8%	56.9%
3734626	171.1.1.1 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3	0.87	79.0	5.77e-01	96.7%	57.7%
None	—		0.87	81.0	6.07e-01	98.9%	51.5%
3697316	171.1.1.1 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3	0.86	79.0	5.90e-01	97.8%	52.7%
3972191	101.1.9.82 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1	0.56	39.0	3.40e-01	73.3%	47.1%

D3 medium residues 117-128_147-200

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3r2kA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.59	43.0	3.28e-01	75.8%	85.7%
1hyhC02	3.90.110.10	Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	0.56	48.0	3.67e-01	97.0%	66.9%
2m4hA00	1.10.260.110	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) ›	0.54	34.0	3.39e-01	86.4%	61.2%
2l6aA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.52	41.0	3.59e-01	87.9%	67.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4437884	171.1.1.4 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3	0.81	75.0	5.56e-01	100.0%	52.3%
3469918	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.59	48.0	3.43e-01	87.9%	65.8%