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RuvC-like_Holliday_junction_resolvase
Euk-VirAnopheles_minimus_iridovirus
RuvC-like_Holliday_junction_resolvase__YP_009021184__Anopheles_minimus_iridovirus__1465751
Identity
- Accession:
- YP_009021184 ↗
- Protein ID:
- RuvC-like_Holliday_junction_resolvase
- Kingdom:
- euk
Quality
89.0
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Chloriridovirus›
Chloriridovirus_anopheles1
TaxID: 1465751
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 37-76
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a62A01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.91 | 82.0 | 7.84e-01 | 100.0% | 87.0% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.85 | 73.0 | 6.61e-01 | 100.0% | 72.7% |
| 3l0oA01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.82 | 69.0 | 6.59e-01 | 100.0% | 81.6% |
| 2ld7A00 | 6.10.160.20 | Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.82 | 70.0 | 5.38e-01 | 100.0% | 42.6% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.73 | 59.0 | 4.66e-01 | 95.0% | 79.8% |
| 1zu4A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.66 | 57.0 | 4.47e-01 | 100.0% | 78.2% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 36.0 | 3.33e-01 | 97.5% | 44.9% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 34.0 | 2.93e-01 | 100.0% | 34.5% |
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.62 | 46.0 | 3.69e-01 | 95.0% | 89.3% |
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.59 | 44.0 | 3.98e-01 | 85.0% | 58.6% |
| 1eg3A03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 43.0 | 3.29e-01 | 80.0% | 93.4% |
| 1t95A02 | 1.10.10.900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › SBDS protein C-terminal domain, subdomain 1 | 0.56 | 48.0 | 3.99e-01 | 100.0% | 58.7% |
| 1g2nA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.53 | 45.0 | 2.81e-01 | 100.0% | 61.8% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.53 | 44.0 | 2.83e-01 | 100.0% | 89.4% |
| 1n93X01 | 1.10.3040.10 | Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1 | 0.51 | 44.0 | 2.83e-01 | 100.0% | 39.9% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5053068 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.98 | 87.0 | 8.72e-01 | 95.0% | 95.0% |
| 4959048 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.95 | 88.0 | 8.06e-01 | 100.0% | 82.0% |
| 3249191 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.95 | 87.0 | 5.27e-01 | 100.0% | 17.8% |
| 3190964 | 130.1.1.20 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH | 0.95 | 86.0 | 7.59e-01 | 97.5% | 70.9% |
| 3943133 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.94 | 87.0 | 8.37e-01 | 100.0% | 88.9% |
| 4428371 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.93 | 85.0 | 8.17e-01 | 100.0% | 88.9% |
| 3172891 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.92 | 84.0 | 7.72e-01 | 100.0% | 80.0% |
| 4623858 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.92 | 84.0 | 8.05e-01 | 100.0% | 88.9% |
| 4260463 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.92 | 83.0 | 7.98e-01 | 100.0% | 88.9% |
| 3472431 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.91 | 82.0 | 8.23e-01 | 97.5% | 97.5% |
| 3611122 | 130.1.1.32 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) | 0.91 | 84.0 | 7.41e-01 | 100.0% | 72.7% |
| 3191284 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.91 | 81.0 | 7.52e-01 | 100.0% | 80.0% |
| 4433184 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.91 | 82.0 | 7.33e-01 | 100.0% | 72.7% |
| 3568558 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.91 | 83.0 | 7.13e-01 | 100.0% | 66.7% |
| 3254598 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.91 | 78.0 | 6.39e-01 | 95.0% | 54.3% |
| 3724166 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.91 | 82.0 | 6.88e-01 | 100.0% | 61.5% |
| 3440160 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.90 | 83.0 | 7.94e-01 | 100.0% | 88.9% |
| 4241485 | 130.1.1.20 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH | 0.90 | 79.0 | 7.07e-01 | 97.5% | 70.9% |
| 3261240 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.90 | 79.0 | 7.98e-01 | 97.5% | 97.5% |
| 3249598 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.89 | 80.0 | 6.57e-01 | 100.0% | 64.3% |
| 3266211 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.89 | 78.0 | 7.22e-01 | 100.0% | 78.0% |
| 3797432 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.89 | 79.0 | 7.20e-01 | 100.0% | 79.2% |
| 3271283 | 130.1.1.20 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH | 0.89 | 79.0 | 6.88e-01 | 100.0% | 70.0% |
| 3838872 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.89 | 79.0 | 7.09e-01 | 100.0% | 72.7% |
| 3934734 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.88 | 78.0 | 7.53e-01 | 100.0% | 91.1% |
| 3253259 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.87 | 74.0 | 7.46e-01 | 95.0% | 95.0% |
| 3272915 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.87 | 78.0 | 7.00e-01 | 100.0% | 81.8% |
| 4113879 | 1.1.7.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 | 0.87 | 68.0 | 4.02e-01 | 85.0% | 12.6% |
| 3390715 | 130.1.1.10 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg | 0.87 | 71.0 | 7.13e-01 | 92.5% | 92.5% |
| 3256790 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.87 | 75.0 | 6.34e-01 | 100.0% | 60.0% |
| 3252664 | 130.1.1.31 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd | 0.86 | 76.0 | 6.87e-01 | 100.0% | 72.7% |
| 3769015 | 130.1.1.2 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM | 0.86 | 77.0 | 7.12e-01 | 100.0% | 84.0% |
| 3699818 | 130.1.1.8 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › ARMET_C | 0.86 | 76.0 | 7.31e-01 | 100.0% | 88.9% |
| 3198528 | 130.1.1.16 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 | 0.86 | 73.0 | 6.67e-01 | 100.0% | 72.7% |
| 3614169 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.85 | 75.0 | 6.56e-01 | 100.0% | 68.3% |
| 3127 | 130.1.1.7 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Endonuc-dimeris | 0.85 | 73.0 | 6.66e-01 | 100.0% | 74.1% |
| 3461868 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.84 | 72.0 | 7.29e-01 | 95.0% | 95.0% |
| 3480954 | 130.1.1.2 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM | 0.82 | 72.0 | 6.98e-01 | 100.0% | 95.6% |
| 3507079 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.80 | 60.0 | 6.01e-01 | 85.0% | 85.0% |
| 3650342 | 130.1.1.10 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg | 0.78 | 61.0 | 5.81e-01 | 92.5% | 74.0% |
| 4317543 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.72 | 61.0 | 4.10e-01 | 100.0% | 28.5% |
| 3893948 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.60 | 42.0 | 2.71e-01 | 75.0% | 25.9% |
| 4947073 | 103.8.1.3 ↗ | alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_C | 0.58 | 49.0 | 4.06e-01 | 100.0% | 58.7% |
| 4965518 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.58 | 41.0 | 3.25e-01 | 85.0% | 80.0% |
| 3705250 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.57 | 45.0 | 3.05e-01 | 95.0% | 47.8% |
| 4986734 | 103.8.1.1 ↗ | alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II | 0.56 | 48.0 | 3.88e-01 | 100.0% | 55.0% |
| 3256882 | 103.8.1.1 ↗ | alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II | 0.55 | 46.0 | 3.93e-01 | 100.0% | 62.9% |
| 4158920 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.54 | 39.0 | 2.81e-01 | 77.5% | 52.6% |
| 5050698 | 10.28.1.1 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 | 0.51 | 40.0 | 2.85e-01 | 90.0% | 40.3% |
D2
medium
residues 141-200
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 42.0 | 3.61e-01 | 76.7% | 85.4% |
| 1x9fD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 49.0 | 3.81e-01 | 95.0% | 90.0% |
| 2hsbA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 49.0 | 3.97e-01 | 100.0% | 92.1% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.56 | 42.0 | 3.26e-01 | 83.3% | 75.2% |
| 4uz0A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 47.0 | 4.24e-01 | 98.3% | 73.6% |
| 3od1A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 45.0 | 2.90e-01 | 95.0% | 73.1% |
| 1ac1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 41.0 | 2.92e-01 | 90.0% | 89.9% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 29.0 | 2.94e-01 | 85.0% | 55.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3408361 | 632.23.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I › DUF4485 | 0.60 | 41.0 | 3.71e-01 | 71.7% | 67.1% |
| 3298285 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 39.0 | 3.73e-01 | 70.0% | 61.3% |
| 4431704 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.58 | 40.0 | 3.90e-01 | 75.0% | 81.4% |
| 3319356 | 650.1.1.5 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › CPP1-like | 0.58 | 42.0 | 4.09e-01 | 93.3% | 69.2% |
| 3580612 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 42.0 | 3.10e-01 | 78.3% | 77.4% |
| 4479551 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.57 | 46.0 | 4.04e-01 | 91.7% | 60.0% |
| 4023307 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.55 | 48.0 | 4.48e-01 | 98.3% | 81.3% |
| 3991964 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.52 | 42.0 | 4.01e-01 | 93.3% | 74.3% |
| 5009781 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.52 | 41.0 | 3.35e-01 | 88.3% | 50.8% |
| 4071670 | 3361.1.1.0 ↗ | alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 | 0.51 | 37.0 | 3.77e-01 | 98.3% | 80.0% |
| 3658204 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.51 | 42.0 | 3.79e-01 | 88.3% | 70.0% |