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S-phase_kinase-associated_protein_1
Euk-VirPandoravirus_macleodensis
S-phase_kinase-associated_protein_1__YP_009481436__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481436 ↗
- Protein ID:
- S-phase_kinase-associated_protein_1
- Kingdom:
- euk
Quality
81.6
mean pLDDT
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-70
Domain cluster:
rep: S-phase_kinase-associated_protein_1__YP_009482443__Pandoravirus_neocaledonia__2107708__D69-131
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03931.22 best | Skp1_POZ | 89.9 | 1.30e-25 | 100.0% | 95.2% |
D2
medium
residues 97-170
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01466.25 best | Skp1 | 105.0 | 1.90e-30 | 64.9% | 100.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d0cB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 48.0 | 3.16e-01 | 74.3% | 21.7% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.56 | 38.0 | 3.52e-01 | 70.3% | 80.0% |
| 5z2mB00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.53 | 42.0 | 3.58e-01 | 91.9% | 96.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3663747 | 226.1.1.3 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ | 0.88 | 79.0 | 5.91e-01 | 94.6% | 42.4% |
| 3216203 | 226.1.1.3 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ | 0.88 | 75.0 | 5.76e-01 | 91.9% | 43.2% |
| 3032616 | 226.1.1.2 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 | 0.83 | 75.0 | 6.94e-01 | 100.0% | 78.7% |
| 1869443 | 226.1.1.2 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 | 0.78 | 67.0 | 6.91e-01 | 100.0% | 100.0% |
| 3703746 | 226.1.1.2 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 | 0.78 | 65.0 | 5.88e-01 | 94.6% | 68.0% |
| 3384790 | 226.1.1.3 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ | 0.73 | 59.0 | 4.71e-01 | 90.5% | 44.8% |
| 3639693 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.57 | 43.0 | 3.89e-01 | 79.7% | 81.0% |
| 3324469 | 109.4.1.1641 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3, PPR_long | 0.55 | 49.0 | 3.49e-01 | 100.0% | 50.0% |
| 3177661 | 109.4.1.1457 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27772 | 0.53 | 46.0 | 3.06e-01 | 100.0% | 38.2% |
| 3372594 | 109.4.1.1156 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif | 0.53 | 47.0 | 3.96e-01 | 98.6% | 60.0% |
| None | — | 0.52 | 41.0 | 2.95e-01 | 83.8% | 42.9% | |
| 3353428 | 109.4.1.1273 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 | 0.50 | 44.0 | 3.58e-01 | 100.0% | 82.1% |