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S-phase_kinase-associated_protein_1

Euk-Vir

Pandoravirus_neocaledonia

S-phase_kinase-associated_protein_1__YP_009482443__Pandoravirus_neocaledonia__2107708

Identity

Accession:
YP_009482443 ↗
Protein ID:
S-phase_kinase-associated_protein_1
Kingdom:
euk

Quality

70.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_neocaledonia

TaxID: 2107708

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 69-131
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03931.22 best Skp1_POZ 91.3 4.80e-26 96.8% 95.2%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b9kE00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.92 79.0 7.00e-01 100.0% 66.3%
6v88A00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.92 84.0 6.70e-01 100.0% 53.4%
6p7vD00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.90 74.0 5.74e-01 100.0% 43.7%
5zb2B00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.88 70.0 6.46e-01 100.0% 67.9%
4uyiA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.78 67.0 5.24e-01 93.7% 52.0%
2p1pA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.72 45.0 3.88e-01 85.7% 45.1%
5eupA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.71 59.0 4.81e-01 93.7% 50.0%
3m62B00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 39.0 3.79e-01 71.4% 97.2%
1cl8A00 3.40.580.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A 0.53 43.0 2.84e-01 88.9% 89.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1349265 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.94 80.0 7.00e-01 100.0% 64.4%
3415579 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.94 89.0 6.53e-01 100.0% 44.1%
3216203 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.94 89.0 6.40e-01 100.0% 43.2%
3241527 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.93 86.0 6.30e-01 100.0% 42.1%
3672376 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.93 86.0 6.18e-01 100.0% 38.7%
3641395 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.93 86.0 6.29e-01 100.0% 42.1%
3927011 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.92 86.0 6.34e-01 100.0% 43.4%
2010157 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.92 80.0 6.61e-01 100.0% 56.3%
3211943 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.91 86.0 6.27e-01 100.0% 44.7%
3213083 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.91 85.0 7.20e-01 100.0% 65.3%
3233859 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.91 84.0 6.36e-01 100.0% 45.9%
3384790 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.91 85.0 6.31e-01 100.0% 44.8%
3931052 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.91 84.0 6.99e-01 100.0% 63.5%
3670565 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.90 83.0 6.34e-01 100.0% 47.7%
4466432 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.90 84.0 7.01e-01 100.0% 64.0%
3487062 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.89 84.0 6.70e-01 100.0% 58.4%
3462466 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.89 82.0 6.16e-01 100.0% 44.3%
3594455 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.89 83.0 5.92e-01 100.0% 38.8%
3991484 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.89 82.0 6.92e-01 100.0% 63.0%
3398736 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.89 82.0 6.33e-01 100.0% 50.8%
3215222 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.89 83.0 6.07e-01 100.0% 44.7%
3220120 226.1.1.2 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 0.89 83.0 5.97e-01 100.0% 41.8%
3206690 109.27.1.4 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › BTB 0.88 77.0 5.19e-01 93.7% 29.5%
3614751 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.88 84.0 7.00e-01 100.0% 67.3%
3245317 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.88 82.0 6.27e-01 100.0% 50.8%
3605895 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.88 81.0 6.66e-01 100.0% 60.4%
3220474 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.87 81.0 5.74e-01 100.0% 38.8%
3632421 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.87 75.0 5.03e-01 93.7% 27.7%
3192890 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.86 75.0 5.70e-01 93.7% 56.3%
3326708 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.86 79.0 5.89e-01 100.0% 46.2%
3679587 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.86 74.0 5.12e-01 93.7% 32.1%
3677941 226.1.1.2 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1 0.85 78.0 5.84e-01 100.0% 46.2%
4018502 226.1.1.3 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1,Skp1_POZ 0.85 78.0 5.88e-01 100.0% 46.9%
3673967 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.84 77.0 6.94e-01 100.0% 77.6%
3233164 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.84 73.0 6.17e-01 93.7% 60.0%
3400548 226.1.1.5 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.84 76.0 5.76e-01 100.0% 45.7%
3645459 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.83 71.0 5.59e-01 93.7% 49.2%
3389639 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.82 70.0 5.70e-01 93.7% 52.2%
3928730 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.82 70.0 5.94e-01 93.7% 59.0%
3451996 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.82 70.0 4.86e-01 93.7% 31.3%
3411133 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.80 70.0 4.82e-01 95.2% 30.0%
3710485 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.80 72.0 5.94e-01 100.0% 70.0%
3936690 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.79 71.0 5.93e-01 100.0% 79.0%
3924164 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.78 66.0 5.26e-01 93.7% 47.2%
3234840 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.78 66.0 5.55e-01 95.2% 56.2%
3243808 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.77 70.0 5.52e-01 100.0% 65.6%
3175339 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.77 65.0 5.05e-01 93.7% 44.6%
3373919 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.77 64.0 5.15e-01 93.7% 47.2%
3933706 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.76 68.0 5.82e-01 100.0% 83.0%
3926486 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.76 67.0 5.68e-01 100.0% 86.7%
3925067 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.75 62.0 4.98e-01 93.7% 46.2%
3216589 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.75 64.0 4.62e-01 95.2% 33.3%
3503779 226.1.1.4 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 0.75 64.0 5.23e-01 93.7% 52.7%
3270580 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.73 62.0 5.08e-01 93.7% 53.0%
3708886 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.73 64.0 4.42e-01 100.0% 32.6%
3409356 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.72 61.0 4.74e-01 93.7% 44.4%
3738972 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.70 56.0 4.59e-01 93.7% 47.5%
5038626 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.53 36.0 2.83e-01 71.4% 80.0%
D2 medium residues 195-226
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01466.25 best Skp1 69.1 3.10e-19 100.0% 66.7%