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S16_GE16_scaffold_10741_prodigal-single.1__X__X__00025

Bact-Vir

S16_GE16_scaffold_10741_prodigal-single.1__X__X__00025

Identity

Kingdom:
phage

Quality

50.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 190-246
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 61.0 5.36e-01 82.5% 90.2%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.79 54.0 4.68e-01 73.7% 47.1%
2xmoA02 1.10.246.180 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.78 60.0 5.27e-01 84.2% 65.1%
3vouB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 61.0 4.58e-01 89.5% 61.8%
4nxiA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.74 56.0 3.82e-01 89.5% 23.8%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.73 57.0 5.94e-01 86.0% 96.2%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.72 60.0 5.33e-01 96.5% 66.3%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 62.0 5.15e-01 98.2% 82.4%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.71 64.0 3.92e-01 96.5% 21.6%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.71 52.0 4.94e-01 78.9% 70.6%
2b0jA02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.71 54.0 4.56e-01 80.7% 57.6%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 49.0 3.66e-01 73.7% 39.0%
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.70 60.0 5.41e-01 98.2% 75.0%
2j16A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.70 44.0 3.39e-01 70.2% 27.8%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.69 55.0 4.96e-01 94.7% 63.3%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 50.0 3.76e-01 80.7% 31.0%
3looB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.69 61.0 3.80e-01 96.5% 25.5%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 44.0 4.64e-01 71.9% 73.1%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 58.0 5.24e-01 100.0% 72.8%
2imhA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 58.0 3.89e-01 96.5% 71.8%
2xd3A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 55.0 3.84e-01 93.0% 68.6%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.66 55.0 4.82e-01 96.5% 72.5%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 53.0 4.63e-01 98.2% 61.0%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.65 45.0 4.29e-01 73.7% 97.1%
1vfpB02 1.20.1110.10 Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain 0.65 55.0 3.36e-01 100.0% 44.4%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.65 55.0 4.88e-01 98.2% 65.1%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.65 56.0 4.89e-01 98.2% 71.3%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 45.0 4.33e-01 73.7% 100.0%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.65 51.0 4.53e-01 86.0% 80.2%
4r9fA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.64 50.0 3.46e-01 86.0% 68.2%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.64 49.0 4.28e-01 80.7% 65.1%
3dm0A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.63 49.0 3.06e-01 89.5% 55.4%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 46.0 4.13e-01 84.2% 55.3%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.62 52.0 4.64e-01 100.0% 70.8%
4i8qA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.62 45.0 2.88e-01 78.9% 16.2%
3okgA01 3.90.220.20 Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains 0.62 51.0 3.61e-01 96.5% 41.7%
2ozbB01 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 47.0 3.72e-01 86.0% 83.2%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.62 45.0 2.93e-01 80.7% 17.3%
2hg2A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.61 44.0 2.87e-01 78.9% 17.1%
1a7lA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 50.0 3.51e-01 96.5% 67.8%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.59 41.0 3.89e-01 73.7% 67.1%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.59 47.0 3.47e-01 87.7% 81.6%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.57 46.0 4.43e-01 96.5% 76.1%
1n69B00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.55 40.0 3.68e-01 82.5% 58.7%
4rjzA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 46.0 3.30e-01 100.0% 65.6%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 44.0 4.04e-01 86.0% 86.3%
3j27A05 1.20.1280.260 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.52 39.0 3.27e-01 82.5% 77.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3282323 7064.1.1.9 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › GtrA_DPMS_TM 0.84 67.0 4.82e-01 84.2% 34.5%
3663214 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.84 77.0 5.69e-01 100.0% 47.4%
3341345 6026.1.1.0 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.84 77.0 5.75e-01 100.0% 49.2%
4951422 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.83 67.0 5.46e-01 86.0% 82.0%
4942421 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.83 67.0 5.22e-01 86.0% 87.0%
5078625 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.83 68.0 4.93e-01 87.7% 70.3%
3203940 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.83 67.0 4.11e-01 86.0% 44.0%
3497137 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.83 67.0 4.11e-01 86.0% 50.0%
5012052 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.82 69.0 5.15e-01 89.5% 76.9%
4457040 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.82 66.0 4.05e-01 86.0% 54.6%
3394326 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.82 67.0 4.03e-01 86.0% 61.3%
3242824 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.80 64.0 3.98e-01 86.0% 35.6%
5036922 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.80 68.0 5.10e-01 91.2% 77.7%
3603679 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.80 64.0 4.99e-01 87.7% 82.5%
None — 0.80 65.0 4.83e-01 87.7% 74.1%
4951198 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.79 65.0 5.06e-01 89.5% 83.3%
5043797 3542.1.1.1 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin 0.79 71.0 4.46e-01 100.0% 22.2%
5043111 3542.1.1.2 ↗ alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › SPP 0.79 69.0 4.42e-01 96.5% 22.4%
4984680 3962.1.1.1 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › HsdM_N 0.79 61.0 4.30e-01 84.2% 28.8%
4540106 3396.1.1.3 ↗ extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF4481 0.79 62.0 5.46e-01 84.2% 62.5%
3700304 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.78 70.0 4.24e-01 96.5% 58.2%
4969962 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.78 62.0 4.82e-01 86.0% 69.2%
4039721 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.78 63.0 4.70e-01 87.7% 77.8%
3215052 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.78 53.0 4.63e-01 71.9% 48.2%
3665480 109.4.1.1559 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tic110 0.77 59.0 3.72e-01 82.5% 18.2%
3368905 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.77 58.0 5.09e-01 84.2% 54.1%
4022689 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.77 67.0 4.22e-01 93.0% 63.8%
4999397 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.77 66.0 4.56e-01 100.0% 34.5%
3929290 614.1.1.0 ↗ alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.76 67.0 6.25e-01 96.5% 88.6%
3487192 5076.1.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.76 64.0 4.02e-01 93.0% 39.0%
4004120 1075.5.1.5 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1 0.76 65.0 3.89e-01 98.2% 16.5%
3989108 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.75 69.0 4.54e-01 100.0% 84.2%
3963056 5067.1.1.2 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF 0.75 65.0 4.34e-01 100.0% 29.8%
354272 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.75 59.0 4.98e-01 86.0% 80.2%
3215295 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.74 64.0 5.82e-01 100.0% 92.5%
4025313 3721.1.1.1 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › VIT1 0.74 49.0 4.60e-01 70.2% 55.7%
4941372 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.74 55.0 4.85e-01 80.7% 88.2%
2440128 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.73 66.0 4.35e-01 100.0% 82.5%
3435497 5058.1.1.7 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › TMEM135_C_rich 0.73 55.0 4.49e-01 82.5% 46.4%
5022467 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.73 60.0 5.01e-01 91.2% 83.0%
3259404 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.73 65.0 3.89e-01 96.5% 21.4%
4953068 604.39.1.9 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 0.72 64.0 4.36e-01 98.2% 68.2%
4941824 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.71 55.0 3.49e-01 86.0% 16.8%
3714029 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.69 48.0 3.35e-01 73.7% 31.6%
4096174 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.65 52.0 4.56e-01 98.2% 57.4%
3899929 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.63 52.0 3.39e-01 98.2% 60.0%
D2 medium residues 8-69
PDB
D3 medium residues 130-186
PDB