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S16_GE16_scaffold_10741_prodigal-single.1__X__X__00113

Bact-Vir

S16_GE16_scaffold_10741_prodigal-single.1__X__X__00113

Identity

Kingdom:
phage

Quality

69.5 mean pLDDT

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-161
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pzmB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.74 69.0 4.98e-01 100.0% 92.7%
4qqrB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 58.0 4.45e-01 95.8% 43.3%
3eheA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.64 50.0 5.46e-01 99.2% 100.0%
6vloC02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.63 48.0 5.21e-01 100.0% 95.0%
4j2oA02 3.90.25.30 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › Polysaccharide biosynthesis protein, CapD-like domain 0.53 39.0 4.28e-01 100.0% 96.9%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 42.0 3.32e-01 87.3% 73.1%
6bwcB02 3.90.25.30 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › Polysaccharide biosynthesis protein, CapD-like domain 0.51 36.0 4.05e-01 94.1% 98.9%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029171 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.76 70.0 5.14e-01 97.5% 48.6%
5062144 2003.1.1.52 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind 0.76 69.0 5.07e-01 98.3% 45.0%
3955553 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.76 70.0 4.95e-01 100.0% 46.8%
None — 0.75 67.0 4.98e-01 94.9% 96.8%
5071318 2003.1.1.52 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind 0.75 65.0 4.79e-01 93.2% 43.7%
5031790 2003.1.1.52 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind 0.75 67.0 4.88e-01 96.6% 46.5%
None — 0.74 68.0 4.88e-01 97.5% 94.8%
3393439 2003.1.1.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase,DUF1731 0.74 65.0 4.76e-01 93.2% 44.4%
328816 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.74 69.0 4.99e-01 100.0% 93.9%
None — 0.74 66.0 4.85e-01 94.9% 44.7%
4230481 2003.1.1.52 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind 0.74 66.0 4.85e-01 94.9% 44.7%
5028019 2003.1.1.52 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind 0.74 68.0 4.94e-01 98.3% 96.0%
4073864 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.74 67.0 4.85e-01 97.5% 94.8%
4663996 2003.1.1.150 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase, RmlD_sub_bind 0.74 68.0 4.95e-01 100.0% 96.8%
4974482 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.74 67.0 5.03e-01 98.3% 95.3%
4959960 2003.1.1.52 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind 0.73 65.0 4.84e-01 95.8% 97.2%
3296997 2003.1.1.141 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Polysacc_synt_2, GDP_Man_Dehyd 0.73 66.0 4.77e-01 99.2% 92.3%
5039532 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.72 64.0 4.61e-01 95.8% 42.5%
5040868 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.71 65.0 4.75e-01 99.2% 46.8%
3277141 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.71 64.0 4.71e-01 100.0% 94.2%
3462383 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.69 51.0 4.23e-01 75.4% 51.8%
3267822 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.68 59.0 5.27e-01 94.1% 74.5%
None — 0.67 61.0 4.39e-01 99.2% 92.6%
3696701 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.67 59.0 4.20e-01 96.6% 52.9%
3730138 2003.1.1.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 0.66 58.0 4.24e-01 95.8% 50.6%
3961742 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.65 59.0 4.88e-01 100.0% 61.0%
None — 0.64 57.0 4.15e-01 95.8% 52.6%
3725264 2003.1.1.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 0.64 56.0 4.12e-01 95.8% 52.3%
3692389 2003.1.1.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA 0.64 57.0 4.17e-01 97.5% 50.3%
2142141 2003.1.1.34 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Polysacc_synt_2 0.63 55.0 3.96e-01 94.9% 95.4%