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S16_GE16_scaffold_10741_prodigal-single.1__X__X__00141
Bact-VirS16_GE16_scaffold_10741_prodigal-single.1__X__X__00141
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-17_55-255
Domain cluster:
rep: NC_041875.1__YP_009594310.1__FDG92_gp21__00021__D5-180
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01510.31 best | Amidase_2 | 53.5 | 4.60e-14 | 79.4% | 76.0% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aroL00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.85 | 54.0 | 6.54e-01 | 91.6% | 92.6% |
| 2bh7A02 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.81 | 56.0 | 6.68e-01 | 85.0% | 98.0% |
| 6su5A01 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.77 | 54.0 | 6.42e-01 | 98.1% | 100.0% |
| 3latA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.74 | 58.0 | 5.89e-01 | 100.0% | 82.6% |
| 2y28B00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.73 | 59.0 | 6.57e-01 | 98.1% | 100.0% |
| 2rkqA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.71 | 53.0 | 6.00e-01 | 92.1% | 95.9% |
| 2eaxA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.71 | 52.0 | 6.00e-01 | 98.1% | 98.2% |
| 5xz3B00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.71 | 53.0 | 6.03e-01 | 93.9% | 97.6% |
| 1ohtA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.71 | 52.0 | 5.85e-01 | 97.2% | 93.1% |
| 2xz4A00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.69 | 51.0 | 5.82e-01 | 98.1% | 98.2% |
| 3ep1A00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.67 | 50.0 | 5.71e-01 | 97.7% | 98.2% |
| 3o8oB04 | 3.40.50.460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain | 0.53 | 28.0 | 3.21e-01 | 79.4% | 67.8% |
| 3c18A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 25.0 | 3.14e-01 | 87.9% | 74.8% |
| 3lrtA02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 26.0 | 3.17e-01 | 83.2% | 75.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1900462 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.85 | 54.0 | 6.54e-01 | 91.6% | 92.6% |
| 2445367 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.84 | 54.0 | 6.36e-01 | 93.9% | 89.1% |
| 4088805 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 58.0 | 6.31e-01 | 97.7% | 84.3% |
| 2774594 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 56.0 | 6.64e-01 | 94.9% | 98.0% |
| 2845647 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 55.0 | 6.54e-01 | 94.9% | 96.7% |
| 4265814 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.80 | 61.0 | 6.95e-01 | 98.1% | 100.0% |
| 3278570 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.76 | 62.0 | 6.76e-01 | 95.3% | 98.9% |
| 1902112 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.74 | 58.0 | 5.89e-01 | 100.0% | 82.6% |
| 3897241 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.72 | 53.0 | 6.16e-01 | 98.6% | 100.0% |
| 3587007 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.72 | 57.0 | 6.24e-01 | 95.8% | 97.2% |
| 4291672 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.72 | 53.0 | 6.09e-01 | 93.9% | 98.2% |
| 1903375 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.71 | 53.0 | 6.00e-01 | 92.1% | 95.9% |
| 3389811 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.71 | 53.0 | 5.83e-01 | 97.2% | 92.0% |
| 3416111 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.71 | 53.0 | 5.96e-01 | 92.5% | 95.9% |
| 3767503 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.71 | 53.0 | 5.97e-01 | 94.4% | 95.4% |
| 2494148 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.69 | 51.0 | 5.68e-01 | 97.2% | 92.0% |
| 3873499 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.69 | 45.0 | 5.52e-01 | 85.0% | 100.0% |
| 3910569 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.68 | 54.0 | 5.81e-01 | 94.4% | 93.5% |
| 3201810 | 285.1.1.0 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like | 0.68 | 53.0 | 5.70e-01 | 94.9% | 91.9% |
| 1900947 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.67 | 50.0 | 5.71e-01 | 97.7% | 98.2% |
| 4429159 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.57 | 54.0 | 4.28e-01 | 98.1% | 75.7% |
| 3376444 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.50 | 20.0 | 2.69e-01 | 86.9% | 63.5% |
D2
high
residues 273-328
Domain cluster:
rep: MW388005.1__QQO39020.1__X__00046__D8-66
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01471.24 best | PG_binding_1 | 65.7 | 4.70e-18 | 92.9% | 86.0% |