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S16_GE16_scaffold_10741_prodigal-single.1__X__X__00161
Bact-VirS16_GE16_scaffold_10741_prodigal-single.1__X__X__00161
Identity
- Kingdom:
- phage
Quality
78.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-76
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rmrA01 | 1.20.5.2710 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 48.0 | 5.17e-01 | 75.0% | 96.6% |
| 1lshA02 | 1.25.10.20 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical | 0.66 | 51.0 | 3.38e-01 | 87.5% | 55.5% |
| 2c35A00 | 1.20.1250.40 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit | 0.65 | 44.0 | 3.67e-01 | 70.8% | 43.8% |
| 4bwrA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 54.0 | 3.29e-01 | 93.1% | 21.0% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.63 | 43.0 | 4.09e-01 | 70.8% | 81.2% |
| 4dloB02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 48.0 | 4.14e-01 | 83.3% | 95.7% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.62 | 43.0 | 3.67e-01 | 73.6% | 63.4% |
| 3qtgA03 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.62 | 35.0 | 3.02e-01 | 72.2% | 35.7% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.61 | 45.0 | 3.95e-01 | 83.3% | 65.3% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 43.0 | 4.55e-01 | 76.4% | 95.2% |
| 7y4rB01 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.60 | 46.0 | 4.19e-01 | 87.5% | 60.4% |
| 2b6cA02 | 1.25.40.290 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains | 0.59 | 44.0 | 4.06e-01 | 83.3% | 59.8% |
| 5mi7A03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.58 | 51.0 | 3.49e-01 | 100.0% | 62.1% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.57 | 42.0 | 4.14e-01 | 79.2% | 76.9% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 43.0 | 3.76e-01 | 81.9% | 84.8% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 39.0 | 4.10e-01 | 70.8% | 90.3% |
| 1ym3A00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.57 | 39.0 | 2.86e-01 | 83.3% | 26.4% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.58e-01 | 79.2% | 67.5% |
| 6vg5A00 | 1.10.10.930 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 44.0 | 4.25e-01 | 86.1% | 76.5% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 38.0 | 3.59e-01 | 75.0% | 76.3% |
| 1w36C06 | 1.10.10.990 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 46.0 | 4.64e-01 | 97.2% | 100.0% |
| 2pjrA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 38.0 | 3.38e-01 | 73.6% | 50.9% |
| 1mw5A01 | 1.20.272.30 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.54 | 39.0 | 3.18e-01 | 80.6% | 38.6% |
| 3lmmB05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 3.86e-01 | 72.2% | 100.0% |
| 5cr4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 36.0 | 2.66e-01 | 76.4% | 46.9% |
| 1ka1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.51 | 42.0 | 3.06e-01 | 100.0% | 31.1% |
| 3fhdA01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.51 | 35.0 | 2.89e-01 | 70.8% | 52.2% |
| 3bg2A02 | 1.10.3550.10 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › eoxyguanosinetriphosphate triphosphohydrolase domain-like | 0.50 | 38.0 | 3.36e-01 | 83.3% | 58.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3363523 | 109.4.1.901 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1 | 0.71 | 61.0 | 4.52e-01 | 97.2% | 77.4% |
| 4955412 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.69 | 57.0 | 4.27e-01 | 90.3% | 79.3% |
| 3247877 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.67 | 47.0 | 4.43e-01 | 76.4% | 60.0% |
| 4322551 | 604.23.1.0 ↗ | alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain | 0.67 | 48.0 | 5.29e-01 | 80.6% | 100.0% |
| 3716548 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.64 | 49.0 | 4.34e-01 | 81.9% | 78.1% |
| 3495345 | 3104.1.1.1 ↗ | alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 | 0.64 | 54.0 | 4.20e-01 | 93.1% | 61.9% |
| 1086916 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.64 | 54.0 | 4.37e-01 | 95.8% | 74.1% |
| 3380721 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 48.0 | 3.66e-01 | 87.5% | 61.7% |
| 3954295 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.62 | 45.0 | 3.44e-01 | 79.2% | 63.8% |
| 4168631 | 101.1.6.20 ↗ | alpha arrays › HTH › HTH › TrpR › PF28388 | 0.61 | 39.0 | 4.48e-01 | 70.8% | 94.0% |
| 3992007 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 44.0 | 4.83e-01 | 76.4% | 100.0% |
| 3592778 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 42.0 | 3.99e-01 | 73.6% | 68.2% |
| 3962352 | 192.29.1.146 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF2231 | 0.60 | 46.0 | 3.64e-01 | 83.3% | 63.4% |
| 4508795 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.58 | 42.0 | 4.06e-01 | 75.0% | 77.5% |
| 4195355 | 109.4.1.19 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N | 0.58 | 47.0 | 3.21e-01 | 97.2% | 31.4% |
| 3682134 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 44.0 | 4.70e-01 | 91.7% | 100.0% |
| 3737247 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.58 | 43.0 | 3.11e-01 | 81.9% | 43.2% |
| 3409435 | 101.1.10.22 ↗ | alpha arrays › HTH › HTH › Cyclin-like › ORC6 | 0.56 | 41.0 | 3.85e-01 | 80.6% | 100.0% |
| 4057698 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.56 | 37.0 | 3.17e-01 | 83.3% | 37.7% |
| 3276216 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.56 | 49.0 | 3.47e-01 | 100.0% | 50.7% |
| 4961990 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.55 | 42.0 | 3.30e-01 | 81.9% | 69.7% |
| 4929469 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 48.0 | 3.05e-01 | 100.0% | 74.4% |
| 5048198 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.55 | 42.0 | 4.14e-01 | 80.6% | 81.3% |
| 3519277 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 39.0 | 4.20e-01 | 77.8% | 93.3% |
| 3520226 | 101.1.1.388 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › FLYWCH | 0.55 | 45.0 | 3.80e-01 | 94.4% | 86.9% |
| 3507907 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.54 | 44.0 | 3.76e-01 | 93.1% | 87.2% |
| 3516730 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.54 | 39.0 | 3.67e-01 | 77.8% | 97.8% |
| 3606822 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.54 | 40.0 | 3.66e-01 | 81.9% | 97.0% |
| 3965373 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.53 | 38.0 | 3.87e-01 | 80.6% | 77.1% |
| 4160580 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.52 | 39.0 | 3.44e-01 | 80.6% | 97.3% |
| 4185536 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.52 | 44.0 | 2.74e-01 | 98.6% | 70.7% |
| 3940617 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.52 | 43.0 | 3.67e-01 | 93.1% | 99.2% |
| 3786649 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.51 | 43.0 | 4.02e-01 | 98.6% | 100.0% |
| 1307667 | 3594.1.1.1 ↗ | alpha bundles › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III › Oncogenic effector CagA domain III › CagA_N | 0.51 | 38.0 | 3.14e-01 | 81.9% | 43.3% |
| 3436562 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 35.0 | 3.55e-01 | 73.6% | 85.3% |