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S16_GE16_scaffold_10741_prodigal-single.1__X__X__00230

Bact-Vir

S16_GE16_scaffold_10741_prodigal-single.1__X__X__00230

Identity

Kingdom:
phage

Quality

75.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-52
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 53.0 4.88e-01 78.3% 61.0%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 54.0 5.04e-01 100.0% 70.5%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 49.0 2.88e-01 80.4% 13.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.24e-01 84.8% 56.5%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 46.0 4.79e-01 76.1% 83.3%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.64 54.0 4.13e-01 100.0% 41.2%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 43.0 2.60e-01 71.7% 10.5%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 3.76e-01 78.3% 45.1%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 44.0 3.98e-01 100.0% 53.0%
1vwxg01 6.20.370.70 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.62 37.0 4.04e-01 78.3% 73.0%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 3.69e-01 100.0% 36.9%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 39.0 3.78e-01 78.3% 53.7%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 46.0 4.19e-01 100.0% 59.1%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 47.0 3.18e-01 89.1% 71.1%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.61 49.0 3.31e-01 97.8% 57.3%
3kreA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 51.0 3.67e-01 100.0% 45.0%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 46.0 4.21e-01 100.0% 62.1%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 44.0 3.91e-01 93.5% 53.4%
2k4nA00 3.30.720.70 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.59 49.0 3.83e-01 100.0% 57.7%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.58 42.0 3.59e-01 84.8% 66.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 43.0 3.91e-01 93.5% 58.2%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 43.0 2.75e-01 82.6% 93.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 3.56e-01 100.0% 44.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.96e-01 95.7% 71.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 36.0 3.56e-01 78.3% 55.8%
2k4rA00 2.40.20.10 Mainly Beta › Beta Barrel › Plasminogen Kringle 4 › Plasminogen Kringle 4 0.56 36.0 3.23e-01 71.7% 39.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 45.0 3.49e-01 100.0% 66.9%
1jmxA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 3.55e-01 100.0% 88.7%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 42.0 3.94e-01 93.5% 65.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 48.0 4.32e-01 100.0% 70.1%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 3.90e-01 100.0% 58.2%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 3.80e-01 100.0% 87.8%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 43.0 3.53e-01 100.0% 72.1%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.54 44.0 3.52e-01 93.5% 78.4%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 37.0 2.60e-01 71.7% 38.9%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.53 37.0 2.20e-01 100.0% 7.7%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 37.0 3.28e-01 80.4% 83.5%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.41e-01 87.0% 81.9%
7d58G02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.40e-01 95.7% 64.3%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 3.64e-01 93.5% 91.1%
4an6B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 41.0 2.96e-01 100.0% 64.3%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.52 38.0 3.42e-01 84.8% 54.9%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.27e-01 100.0% 46.0%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.65e-01 100.0% 82.5%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.17e-01 93.5% 45.0%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 39.0 2.80e-01 100.0% 49.2%
2n6eA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.51 42.0 3.31e-01 100.0% 46.4%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.50 39.0 2.99e-01 97.8% 71.3%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287619 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.75 51.0 2.93e-01 91.3% 7.8%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.73 51.0 4.58e-01 84.8% 52.3%
4014812 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.72 58.0 5.47e-01 100.0% 73.3%
4025311 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.72 52.0 5.10e-01 78.3% 76.0%
3790904 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.71 56.0 5.26e-01 100.0% 70.0%
3694693 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.71 60.0 5.39e-01 100.0% 67.7%
3907406 109.4.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR 0.71 50.0 3.11e-01 78.3% 20.0%
4208181 4.1.1.70 ↗ beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.70 48.0 4.33e-01 84.8% 50.8%
3573585 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 57.0 5.51e-01 100.0% 81.5%
5061147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 4.46e-01 91.3% 50.5%
3919495 109.4.1.20 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR 0.69 59.0 3.14e-01 100.0% 9.7%
3990293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 59.0 5.61e-01 100.0% 83.6%
3786120 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 56.0 5.52e-01 97.8% 88.0%
3701345 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 3.90e-01 80.4% 41.2%
3933293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 52.0 4.96e-01 100.0% 72.4%
3927677 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 54.0 5.44e-01 97.8% 95.6%
3214162 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 53.0 5.00e-01 100.0% 73.3%
3707653 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 52.0 5.15e-01 100.0% 84.0%
3767452 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 3.67e-01 84.8% 33.6%
3368743 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 55.0 5.12e-01 100.0% 85.0%
4888987 4.1.1.6 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.65 43.0 3.83e-01 78.3% 46.4%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 41.0 3.09e-01 76.1% 24.3%
3365937 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.65 54.0 5.08e-01 100.0% 85.0%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.26e-01 100.0% 61.8%
3732468 7575.1.1.11 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 0.62 52.0 3.23e-01 100.0% 42.4%
3180626 4.8.1.36 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7141 0.62 51.0 5.00e-01 100.0% 90.0%
3973947 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.61 53.0 4.68e-01 100.0% 84.3%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 3.91e-01 93.5% 51.4%
3943457 2007.1.5.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › AroM 0.61 45.0 3.45e-01 82.6% 53.9%
3669779 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 49.0 3.63e-01 100.0% 56.4%
3958768 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 4.12e-01 100.0% 55.0%
3912274 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.59 42.0 3.76e-01 84.8% 51.4%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.59 50.0 4.35e-01 100.0% 61.3%
None — 0.59 51.0 3.09e-01 100.0% 97.7%
4825768 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.59 40.0 4.17e-01 80.4% 81.0%
3422528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 4.24e-01 100.0% 66.7%
3890058 358.1.1.3 ↗ a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR_2 0.58 42.0 3.62e-01 100.0% 43.2%
3255946 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.90e-01 100.0% 51.2%
4976267 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 41.0 2.57e-01 71.7% 30.2%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 3.64e-01 100.0% 45.5%
3699568 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.57 41.0 3.64e-01 87.0% 51.4%
3998381 2004.1.1.432 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.56 37.0 2.32e-01 78.3% 12.7%
3514959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 43.0 3.00e-01 93.5% 23.6%
4322616 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.56 43.0 2.92e-01 100.0% 46.5%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 3.39e-01 100.0% 40.0%
3508714 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.55 43.0 3.18e-01 100.0% 84.4%
4107506 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 39.0 3.61e-01 100.0% 56.9%
3891033 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 47.0 4.10e-01 100.0% 64.4%
3960168 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.54 44.0 4.33e-01 100.0% 88.0%
4159666 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 42.0 3.36e-01 95.7% 87.2%
4068978 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 39.0 3.46e-01 100.0% 50.7%
None — 0.53 41.0 2.47e-01 87.0% 27.2%
4020238 1.1.7.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.53 44.0 3.16e-01 100.0% 68.7%
4127839 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 40.0 3.49e-01 100.0% 50.7%
3890480 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 41.0 3.62e-01 93.5% 54.7%
3238035 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 40.0 4.01e-01 100.0% 88.0%
4424678 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.52 42.0 3.88e-01 100.0% 70.8%
3945142 252.2.1.7 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF30395 0.52 36.0 3.55e-01 76.1% 80.0%
5025127 2004.1.1.791 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_bR2 0.52 42.0 2.77e-01 97.8% 54.3%
185990 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.52 42.0 3.31e-01 100.0% 59.3%
3616998 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 3.30e-01 91.3% 71.6%
5017964 220.1.1.322 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6141 0.51 44.0 3.60e-01 100.0% 58.4%
3584039 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.50 42.0 2.52e-01 97.8% 25.8%
4051690 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.50 41.0 3.27e-01 100.0% 61.0%