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S16_GE16_scaffold_10741_prodigal-single.1__X__X__00342
Bact-VirS16_GE16_scaffold_10741_prodigal-single.1__X__X__00342
Identity
- Kingdom:
- phage
Quality
91.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 203-286
Domain cluster:
rep: RNA_ligase_2__YP_007354114__Acanthamoeba_polyphaga_moumouvirus__1269028__D219-293
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 56.0 | 5.74e-01 | 85.7% | 85.4% |
| 1b10A00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.70 | 60.0 | 5.63e-01 | 96.4% | 76.0% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 56.0 | 4.65e-01 | 89.3% | 94.5% |
| 1gcvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 55.0 | 4.64e-01 | 89.3% | 95.0% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 55.0 | 4.60e-01 | 90.5% | 89.3% |
| 5u4nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 47.0 | 3.09e-01 | 73.8% | 24.6% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.66 | 52.0 | 4.31e-01 | 85.7% | 87.5% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.65 | 44.0 | 4.45e-01 | 88.1% | 69.9% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 51.0 | 4.30e-01 | 86.9% | 87.2% |
| 2qgnA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.64 | 40.0 | 4.11e-01 | 95.2% | 64.6% |
| 1or4B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 53.0 | 4.34e-01 | 91.7% | 98.7% |
| 2w0gA00 | 1.20.58.610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain | 0.64 | 45.0 | 3.98e-01 | 75.0% | 65.9% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 51.0 | 4.40e-01 | 89.3% | 93.5% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.63 | 54.0 | 5.02e-01 | 97.6% | 75.9% |
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 48.0 | 3.76e-01 | 82.1% | 40.1% |
| 4dhxB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.63 | 42.0 | 4.18e-01 | 70.2% | 67.0% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.62 | 46.0 | 4.54e-01 | 88.1% | 73.9% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 43.0 | 2.97e-01 | 75.0% | 31.9% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.60 | 45.0 | 3.85e-01 | 81.0% | 52.5% |
| 1ithA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 46.0 | 3.95e-01 | 84.5% | 95.7% |
| 3fmcC01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.59 | 52.0 | 3.63e-01 | 100.0% | 62.8% |
| 6wy9B01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.59 | 48.0 | 4.29e-01 | 86.9% | 66.4% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.59 | 41.0 | 3.57e-01 | 73.8% | 98.5% |
| 2q00B00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 40.0 | 3.62e-01 | 73.8% | 82.0% |
| 2hytA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 51.0 | 3.90e-01 | 100.0% | 45.1% |
| 5ulcX00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 39.0 | 3.51e-01 | 72.6% | 63.1% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.56 | 40.0 | 3.96e-01 | 82.1% | 68.5% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.56 | 44.0 | 4.32e-01 | 89.3% | 83.0% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 38.0 | 2.71e-01 | 71.4% | 98.2% |
| 1te2A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 37.0 | 3.98e-01 | 85.7% | 83.3% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 38.0 | 3.50e-01 | 73.8% | 99.1% |
| 4bbrM00 | 1.10.472.170 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.53 | 36.0 | 2.81e-01 | 73.8% | 30.6% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 46.0 | 3.80e-01 | 98.8% | 81.6% |
| 1qkrB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 38.0 | 2.96e-01 | 76.2% | 57.2% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 36.0 | 4.04e-01 | 72.6% | 92.3% |
| 1rj1A00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.52 | 40.0 | 3.36e-01 | 83.3% | 91.9% |
| 1lkvX02 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.51 | 40.0 | 3.46e-01 | 84.5% | 87.9% |
| 1l6nA02 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.51 | 41.0 | 3.59e-01 | 88.1% | 77.1% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.51 | 39.0 | 2.99e-01 | 86.9% | 59.3% |
| 4jzaA03 | 1.20.120.1720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 35.0 | 2.90e-01 | 72.6% | 69.3% |
| 3rgoA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 42.0 | 3.45e-01 | 91.7% | 58.0% |
| 3s0xA01 | 1.20.120.1220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 37.0 | 3.21e-01 | 81.0% | 87.8% |
| 2o57A01 | 1.10.287.840 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like | 0.50 | 43.0 | 4.02e-01 | 96.4% | 100.0% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 36.0 | 3.97e-01 | 77.4% | 97.0% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4336031 | 172.2.1.1 ↗ | alpha complex topology › Citrate synthase-like › Urease accessory protein ureF › Urease accessory protein ureF › UreF | 0.70 | 63.0 | 4.58e-01 | 100.0% | 74.2% |
| 3596111 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.69 | 57.0 | 4.38e-01 | 91.7% | 42.1% |
| 3728909 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.67 | 53.0 | 4.81e-01 | 84.5% | 76.4% |
| 4926779 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.66 | 36.0 | 3.04e-01 | 76.2% | 33.3% |
| 3176307 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.66 | 53.0 | 4.55e-01 | 89.3% | 90.7% |
| 4372101 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.66 | 45.0 | 4.00e-01 | 90.5% | 48.0% |
| 2889550 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.66 | 45.0 | 4.52e-01 | 86.9% | 70.2% |
| 4249597 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.65 | 57.0 | 5.27e-01 | 96.4% | 79.0% |
| 184733 | 3640.1.1.1 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp | 0.64 | 55.0 | 4.76e-01 | 100.0% | 60.7% |
| 3511626 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.64 | 52.0 | 4.22e-01 | 91.7% | 92.4% |
| 3935113 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.63 | 51.0 | 4.13e-01 | 91.7% | 94.7% |
| 3513623 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.63 | 51.0 | 4.20e-01 | 92.9% | 92.7% |
| 3991663 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.62 | 43.0 | 4.15e-01 | 71.4% | 67.4% |
| 3260684 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.62 | 33.0 | 3.85e-01 | 84.5% | 76.4% |
| 3511298 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.62 | 52.0 | 4.13e-01 | 96.4% | 85.3% |
| 3581597 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.62 | 50.0 | 4.08e-01 | 89.3% | 88.3% |
| 1116947 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.62 | 53.0 | 3.66e-01 | 96.4% | 71.2% |
| 4618102 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.61 | 50.0 | 5.15e-01 | 91.7% | 97.5% |
| 3822 | 604.4.1.1 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP › AHSP | 0.61 | 53.0 | 5.22e-01 | 96.4% | 95.6% |
| 4262528 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.61 | 55.0 | 4.11e-01 | 100.0% | 43.9% |
| 3931089 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.61 | 42.0 | 4.20e-01 | 72.6% | 72.2% |
| 3642887 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.61 | 55.0 | 4.04e-01 | 100.0% | 44.5% |
| 4009260 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.61 | 54.0 | 4.08e-01 | 100.0% | 41.5% |
| 3589446 | 2004.1.1.301 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 | 0.60 | 44.0 | 2.78e-01 | 78.6% | 79.6% |
| 154418 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.59 | 49.0 | 4.11e-01 | 94.0% | 92.1% |
| 3626614 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.59 | 52.0 | 3.85e-01 | 100.0% | 38.2% |
| 3782656 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.58 | 50.0 | 3.78e-01 | 97.6% | 76.4% |
| 3655744 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 44.0 | 4.31e-01 | 100.0% | 73.7% |
| 3932997 | 626.1.1.1 ↗ | alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › FH2 | 0.58 | 49.0 | 3.12e-01 | 90.5% | 37.2% |
| 4253860 | 2004.1.1.77 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87,HerA_C | 0.58 | 47.0 | 3.14e-01 | 92.9% | 23.7% |
| 4880365 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.58 | 52.0 | 3.91e-01 | 100.0% | 41.6% |
| 4027782 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.57 | 50.0 | 3.33e-01 | 98.8% | 24.5% |
| 3479676 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 51.0 | 3.98e-01 | 100.0% | 48.3% |
| 4252582 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.56 | 47.0 | 3.88e-01 | 94.0% | 94.8% |
| 5057794 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.55 | 46.0 | 4.05e-01 | 91.7% | 82.4% |
| 4023307 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.55 | 38.0 | 4.01e-01 | 71.4% | 90.7% |
| 3772919 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 48.0 | 3.21e-01 | 100.0% | 25.9% |
| 4015806 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 46.0 | 3.41e-01 | 100.0% | 37.9% |
| 3178388 | 1075.5.1.5 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › Rft-1 | 0.52 | 45.0 | 3.23e-01 | 100.0% | 37.5% |
| 3600071 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.52 | 37.0 | 4.10e-01 | 96.4% | 95.4% |
| 4939046 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.50 | 39.0 | 4.06e-01 | 88.1% | 88.7% |
D2
medium
residues 6-27_132-200
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s68A01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.78 | 67.0 | 6.20e-01 | 92.3% | 99.1% |
| 4d05A01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.70 | 50.0 | 5.42e-01 | 86.8% | 89.5% |
| 1b04A02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.67 | 55.0 | 5.37e-01 | 89.0% | 99.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 193072 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.78 | 67.0 | 4.88e-01 | 92.3% | 96.2% |
| 3270508 | 206.1.3.23 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase | 0.74 | 63.0 | 4.63e-01 | 91.2% | 87.8% |
| 3593923 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 44.0 | 3.01e-01 | 94.5% | 81.4% |
D3
medium
residues 28-131
Domain cluster:
rep: MT157285.1__QIW86072.1__PKP2_20__00020__D36-168
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s68A02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.83 | 76.0 | 7.34e-01 | 97.1% | 100.0% |
| 6rarI01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.70 | 65.0 | 5.20e-01 | 100.0% | 63.6% |
| 4glwA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.67 | 61.0 | 4.72e-01 | 100.0% | 60.8% |
| 2cfmA02 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.65 | 59.0 | 4.74e-01 | 100.0% | 62.7% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.64 | 56.0 | 4.90e-01 | 96.2% | 84.8% |
| 4ckbA01 | 3.30.470.140 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.64 | 49.0 | 4.14e-01 | 100.0% | 47.8% |
| 3vnnA00 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.63 | 57.0 | 5.37e-01 | 100.0% | 94.4% |
| 5dmxB02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.63 | 44.0 | 3.87e-01 | 79.8% | 48.1% |
| 1jllB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 46.0 | 4.00e-01 | 76.9% | 72.9% |
| 5h80B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 46.0 | 3.49e-01 | 79.8% | 35.5% |
| 6melB01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 45.0 | 3.94e-01 | 76.9% | 72.9% |
| 1ehiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.59 | 44.0 | 3.97e-01 | 79.8% | 71.5% |
| 3daaA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.58 | 44.0 | 4.23e-01 | 79.8% | 82.2% |
| 3fruA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.58 | 50.0 | 4.24e-01 | 97.1% | 84.2% |
| 7z79A01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.57 | 42.0 | 4.01e-01 | 79.8% | 75.2% |
| 1gsoA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 43.0 | 3.95e-01 | 80.8% | 73.4% |
| 3lulA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.57 | 43.0 | 4.21e-01 | 79.8% | 84.8% |
| 3wwhA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.56 | 41.0 | 3.67e-01 | 78.8% | 61.4% |
| 3vpbB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 40.0 | 3.92e-01 | 78.8% | 75.9% |
| 3gkeA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.54 | 39.0 | 3.16e-01 | 76.9% | 65.2% |
| 1yc9A02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.53 | 36.0 | 3.98e-01 | 98.1% | 88.0% |
| 3natA01 | 3.40.50.11250 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 | 0.51 | 36.0 | 3.27e-01 | 73.1% | 93.2% |
| 1bp1A01 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.51 | 38.0 | 3.20e-01 | 79.8% | 90.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2559783 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.70 | 64.0 | 5.12e-01 | 100.0% | 61.7% |
| 3987360 | 206.1.3.84 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › R2K_2 | 0.64 | 42.0 | 3.60e-01 | 80.8% | 41.2% |
| 3272303 | 206.1.2.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin | 0.60 | 46.0 | 3.06e-01 | 80.8% | 63.4% |
| 4016094 | 206.1.3.25 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 | 0.60 | 45.0 | 3.39e-01 | 79.8% | 46.8% |
| 3735269 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.56 | 48.0 | 3.72e-01 | 99.0% | 86.5% |
| 4013152 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.55 | 47.0 | 3.56e-01 | 99.0% | 72.8% |
| 4680385 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.53 | 45.0 | 3.52e-01 | 99.0% | 84.2% |
| 4984031 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.53 | 43.0 | 3.84e-01 | 93.3% | 83.7% |
| 3901435 | 11.2.1.57 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28126 | 0.52 | 48.0 | 3.96e-01 | 100.0% | 65.6% |
| 3414338 | 11.2.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 | 0.52 | 44.0 | 3.64e-01 | 92.3% | 65.4% |
| 4946800 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 3.47e-01 | 80.8% | 85.2% |
| 3568082 | 7508.1.1.1 ↗ | a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › Glyco_transf_90 | 0.51 | 39.0 | 3.65e-01 | 100.0% | 64.6% |
| 4550840 | 2003.1.5.213 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS, tRNA_U5-meth_tr | 0.51 | 45.0 | 3.12e-01 | 99.0% | 52.7% |
| 3199870 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 37.0 | 2.91e-01 | 77.9% | 64.2% |