←Back to structures

S16_GE16_scaffold_10741_prodigal-single.1__X__X__00349

Bact-Vir

S16_GE16_scaffold_10741_prodigal-single.1__X__X__00349

Identity

Kingdom:
phage

Quality

70.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-50
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ze3A02 6.10.250.510 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 45.0 4.67e-01 89.4% 69.8%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.57e-01 97.9% 87.9%
5gxvA02 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.66 58.0 4.62e-01 100.0% 83.3%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.66 49.0 5.18e-01 100.0% 95.1%
7jiuA03 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.66 52.0 3.83e-01 95.7% 31.6%
1e6dM01 1.20.85.10 Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like 0.64 45.0 3.28e-01 100.0% 24.5%
3otdA00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.63 49.0 3.19e-01 100.0% 17.9%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.62e-01 95.7% 73.2%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.61 48.0 4.57e-01 97.9% 71.9%
2oq1A02 1.10.930.10 Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 0.60 51.0 5.22e-01 100.0% 100.0%
2dofA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.58 47.0 4.01e-01 95.7% 52.9%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.58 44.0 4.29e-01 87.2% 90.6%
3pmiA02 6.10.300.20 Special › Helix non-globular › cAMP-dependent Protein Kinase, Chain A › 0.57 45.0 4.52e-01 91.5% 95.8%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.57 45.0 3.94e-01 91.5% 63.3%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.57 48.0 4.73e-01 97.9% 88.5%
3ljkA03 1.10.1390.10 Mainly Alpha › Orthogonal Bundle › Phosphoglucose isomerase, C-terminal domain › 0.57 36.0 3.95e-01 95.7% 79.5%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.56 44.0 3.95e-01 95.7% 59.7%
2vqxA01 3.10.170.10 Alpha Beta › Roll › Elastase; domain 1 › 0.54 45.0 3.14e-01 95.7% 49.0%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 43.0 3.04e-01 100.0% 38.8%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.50 40.0 3.27e-01 95.7% 52.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3635357 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.73 63.0 4.04e-01 100.0% 21.4%
4168631 101.1.6.20 ↗ alpha arrays › HTH › HTH › TrpR › PF28388 0.70 48.0 4.74e-01 97.9% 68.0%
4269306 101.1.1.287 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF28388 0.70 48.0 4.74e-01 97.9% 68.0%
5074147 304.48.1.20 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 0.69 54.0 3.48e-01 100.0% 18.3%
3347305 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.65 47.0 3.20e-01 89.4% 21.8%
4967622 101.1.7.0 ↗ alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C 0.65 45.0 4.65e-01 76.6% 82.2%
4984675 101.1.2.21 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.64 53.0 3.95e-01 100.0% 36.7%
3329805 101.1.1.30 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.61 44.0 3.09e-01 89.4% 23.1%
4977712 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.60 50.0 2.88e-01 100.0% 11.9%
3336061 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.60 45.0 4.11e-01 91.5% 58.6%
4333281 325.1.7.53 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › EP400_N 0.58 46.0 4.32e-01 100.0% 78.5%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 43.0 3.40e-01 100.0% 37.3%
3594706 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 45.0 4.17e-01 95.7% 73.3%
223453 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 43.0 3.04e-01 100.0% 38.6%