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S16_GE16_scaffold_10741_prodigal-single.1__X__X__00351
Bact-VirS16_GE16_scaffold_10741_prodigal-single.1__X__X__00351
Identity
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-68
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7e52A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.65 | 36.0 | 2.89e-01 | 93.9% | 27.3% |
| 1pg5B02 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.62 | 43.0 | 4.54e-01 | 100.0% | 84.2% |
| 4fw1A02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.60 | 36.0 | 3.91e-01 | 97.0% | 72.2% |
| 1zx5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 44.0 | 3.11e-01 | 90.9% | 31.3% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 36.0 | 3.83e-01 | 98.5% | 79.7% |
| 1jzdC00 | 2.60.40.1250 | Mainly Beta › Sandwich › Immunoglobulin-like › Thiol:disulfide interchange protein DsbD, N-terminal domain | 0.51 | 40.0 | 3.46e-01 | 93.9% | 84.7% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983060 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.66 | 31.0 | 2.90e-01 | 100.0% | 36.3% |
| 4938633 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 44.0 | 3.42e-01 | 95.5% | 40.0% |
| 3635699 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.57 | 48.0 | 4.06e-01 | 93.9% | 59.1% |
| 3362417 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 45.0 | 3.42e-01 | 92.4% | 94.8% |
| 4942439 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.54 | 45.0 | 3.59e-01 | 98.5% | 82.8% |
| 3811020 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.51 | 37.0 | 3.26e-01 | 100.0% | 51.0% |
| 4983110 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.22e-01 | 89.4% | 82.9% |
D2
high
residues 83-164
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.72 | 54.0 | 4.66e-01 | 78.0% | 87.9% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.69 | 47.0 | 3.67e-01 | 70.7% | 91.3% |
| 4xt1A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.63 | 49.0 | 3.45e-01 | 86.6% | 78.7% |
| 5mmiJ02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.61 | 41.0 | 4.45e-01 | 100.0% | 82.6% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 48.0 | 3.70e-01 | 86.6% | 73.1% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.58 | 48.0 | 3.87e-01 | 86.6% | 85.2% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.58 | 40.0 | 4.04e-01 | 70.7% | 82.7% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 42.0 | 4.40e-01 | 78.0% | 87.8% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 47.0 | 4.02e-01 | 90.2% | 87.4% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 48.0 | 3.74e-01 | 96.3% | 67.1% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 40.0 | 3.92e-01 | 82.9% | 71.4% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 42.0 | 3.62e-01 | 90.2% | 76.9% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.53 | 44.0 | 3.76e-01 | 91.5% | 80.6% |
| 2y8nA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.53 | 41.0 | 2.41e-01 | 86.6% | 24.5% |
| 3fmcC01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 46.0 | 3.14e-01 | 98.8% | 38.3% |
| 2e8gA01 | 1.20.1440.150 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 41.0 | 3.66e-01 | 89.0% | 70.2% |
| 2zs0A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 41.0 | 3.56e-01 | 92.7% | 77.9% |
| 2ijqA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.51 | 38.0 | 3.29e-01 | 84.1% | 79.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4967597 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.63 | 46.0 | 3.11e-01 | 78.0% | 73.3% |
| 3168475 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.61 | 42.0 | 3.10e-01 | 72.0% | 44.5% |
| 437078 | 3713.1.1.1 ↗ | alpha bundles › Small terminase central domain › Small terminase central domain › Small terminase central domain › DNA_Packaging | 0.60 | 43.0 | 4.13e-01 | 74.4% | 86.8% |
| 3704975 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.58 | 41.0 | 3.51e-01 | 73.2% | 92.6% |
| 3701760 | 611.3.1.0 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.57 | 42.0 | 3.60e-01 | 79.3% | 79.3% |
| 4265058 | 192.15.1.73 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › GrpE | 0.55 | 32.0 | 2.80e-01 | 72.0% | 38.3% |
| 3717119 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 41.0 | 3.09e-01 | 89.0% | 85.7% |
| 5005588 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.51 | 43.0 | 3.40e-01 | 100.0% | 83.1% |