←Back to structures
S16_GE16_scaffold_10741_prodigal-single.1__X__X__00364
Bact-VirS16_GE16_scaffold_10741_prodigal-single.1__X__X__00364
Identity
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 197-245
Domain cluster:
rep: ON526839.1__URG17631.1__GRN51_150__00015__D54-100
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.86 | 77.0 | 6.92e-01 | 100.0% | 72.1% |
| 1iyjB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 43.0 | 3.10e-01 | 100.0% | 21.8% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.67 | 47.0 | 4.01e-01 | 100.0% | 45.7% |
| 3wajA03 | 1.20.58.1650 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 38.0 | 3.04e-01 | 98.0% | 28.0% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.64 | 42.0 | 3.73e-01 | 75.5% | 43.8% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.63 | 45.0 | 4.51e-01 | 77.6% | 94.0% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 51.0 | 3.91e-01 | 100.0% | 86.7% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.60 | 44.0 | 3.90e-01 | 79.6% | 72.6% |
| 1ihnA00 | 3.40.1230.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like | 0.60 | 50.0 | 3.98e-01 | 100.0% | 79.6% |
| 2cyjA00 | 3.40.1230.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like | 0.60 | 51.0 | 3.93e-01 | 100.0% | 82.1% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.57 | 40.0 | 3.79e-01 | 100.0% | 60.7% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.57 | 49.0 | 4.80e-01 | 100.0% | 100.0% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.57 | 48.0 | 4.16e-01 | 100.0% | 64.6% |
| 3oouA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 46.0 | 4.51e-01 | 93.9% | 85.5% |
| 6fwvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.22e-01 | 100.0% | 40.0% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.55 | 42.0 | 4.34e-01 | 85.7% | 97.8% |
| 3rkgA01 | 2.40.128.330 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 44.0 | 3.73e-01 | 100.0% | 83.0% |
| 1wi0A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 42.0 | 3.39e-01 | 98.0% | 77.9% |
| 4hltA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 44.0 | 3.10e-01 | 98.0% | 73.0% |
| 6xiuA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 39.0 | 3.26e-01 | 93.9% | 43.6% |
| 3fn2A00 | 3.30.2200.10 | Alpha Beta › 2-Layer Sandwich › histidine kinase doma clostridium symbiosum atcc 14940 › histidine kinase doma clostridium symbiosum atcc 14940 | 0.52 | 39.0 | 3.12e-01 | 100.0% | 41.2% |
| 4f4oC03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 45.0 | 3.74e-01 | 100.0% | 56.2% |
| 1yfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.51 | 41.0 | 2.68e-01 | 100.0% | 80.7% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 45.0 | 3.17e-01 | 100.0% | 37.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2876 | 101.1.14.2 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like | 0.86 | 77.0 | 6.89e-01 | 100.0% | 71.0% |
| 4414927 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.75 | 65.0 | 5.86e-01 | 100.0% | 72.5% |
| 3171408 | 101.1.14.3 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 | 0.70 | 57.0 | 5.76e-01 | 95.9% | 96.0% |
| 3587703 | 101.1.14.0 ↗ | alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases | 0.70 | 56.0 | 5.60e-01 | 98.0% | 94.0% |
| 3933682 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.68 | 48.0 | 3.65e-01 | 100.0% | 32.2% |
| 5053186 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.65 | 53.0 | 4.13e-01 | 100.0% | 75.2% |
| 3804735 | 822.1.1.3 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 | 0.64 | 44.0 | 4.25e-01 | 100.0% | 62.7% |
| 2074716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.61 | 44.0 | 4.38e-01 | 77.6% | 100.0% |
| 4024679 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.60 | 41.0 | 3.97e-01 | 100.0% | 61.7% |
| 3201224 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.58 | 46.0 | 3.76e-01 | 93.9% | 90.3% |
| 1392732 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.57 | 43.0 | 3.44e-01 | 87.8% | 79.1% |
| 4019840 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.56 | 47.0 | 3.64e-01 | 100.0% | 99.2% |
| None | — | 0.55 | 46.0 | 2.57e-01 | 100.0% | 7.6% | |
| 3465043 | 6108.1.1.0 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins | 0.55 | 45.0 | 2.55e-01 | 100.0% | 7.3% |
| 4943773 | 297.1.1.2 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › Sua5_yciO_yrdC | 0.55 | 44.0 | 3.01e-01 | 100.0% | 81.9% |
| 3257319 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.51 | 44.0 | 3.57e-01 | 100.0% | 80.0% |
| 2387834 | 5.4.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like | 0.51 | 39.0 | 2.86e-01 | 87.8% | 47.1% |
| 3904587 | 11.1.1.1087 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GBD_Hemicentin | 0.51 | 45.0 | 2.93e-01 | 100.0% | 22.9% |
| 3482975 | 223.2.1.7 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N | 0.50 | 39.0 | 3.04e-01 | 89.8% | 51.2% |
D2
medium
residues 1-87
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_238879_prodigal-single.1__X__X__00123__D1-70
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.89 | 69.0 | 6.78e-01 | 80.5% | 76.1% |