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S16_GE16_scaffold_10741_prodigal-single.1__X__X__00381
Bact-VirS16_GE16_scaffold_10741_prodigal-single.1__X__X__00381
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-17_167-226
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uobA01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.84 | 76.0 | 6.40e-01 | 100.0% | 75.9% |
| 1rrsA01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.82 | 75.0 | 6.40e-01 | 100.0% | 80.2% |
| 1kg2A01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.81 | 74.0 | 6.32e-01 | 100.0% | 80.4% |
| 3n5nX01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.81 | 74.0 | 6.14e-01 | 100.0% | 73.6% |
| 4unfA01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.81 | 73.0 | 6.08e-01 | 100.0% | 72.3% |
| 1keaA01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.80 | 72.0 | 6.33e-01 | 100.0% | 84.6% |
| 2abkA02 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.79 | 71.0 | 6.35e-01 | 100.0% | 82.8% |
| 1ornA02 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.76 | 67.0 | 6.04e-01 | 100.0% | 83.0% |
| 1jqkA03 | 1.20.1270.30 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.65 | 44.0 | 3.31e-01 | 70.4% | 88.0% |
| 1xqoA01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.63 | 55.0 | 4.67e-01 | 100.0% | 87.3% |
| 1ymgA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.59 | 40.0 | 2.80e-01 | 70.4% | 57.9% |
| 1w2yA00 | 1.10.4010.10 | Mainly Alpha › Orthogonal Bundle › all-alpha NTP pyrophosphatase fold › Type II deoxyuridine triphosphatase | 0.56 | 41.0 | 2.96e-01 | 80.3% | 85.8% |
| 1j33A02 | 3.40.50.10210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (CobT), large domain | 0.52 | 45.0 | 3.07e-01 | 97.2% | 64.1% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4041358 | 102.1.2.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD,EndIII_4Fe-2S | 0.87 | 80.0 | 5.49e-01 | 100.0% | 91.9% |
| 3963490 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.85 | 78.0 | 5.33e-01 | 100.0% | 90.2% |
| 4930650 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.84 | 78.0 | 5.19e-01 | 100.0% | 82.0% |
| 1558902 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.84 | 77.0 | 5.19e-01 | 100.0% | 88.4% |
| 4287219 | 102.1.2.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD | 0.83 | 77.0 | 5.27e-01 | 100.0% | 88.9% |
| 4195460 | 102.1.2.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD | 0.83 | 76.0 | 5.22e-01 | 100.0% | 89.8% |
| 5010691 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.83 | 75.0 | 5.14e-01 | 100.0% | 88.9% |
| 3250834 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.82 | 76.0 | 5.05e-01 | 100.0% | 82.0% |
| 3386937 | 102.1.2.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD | 0.82 | 76.0 | 5.20e-01 | 100.0% | 93.3% |
| 4934680 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.82 | 73.0 | 5.06e-01 | 97.2% | 97.7% |
| 4880447 | 102.1.2.12 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S | 0.82 | 75.0 | 5.15e-01 | 100.0% | 90.5% |
| 5010428 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.81 | 74.0 | 5.11e-01 | 100.0% | 92.8% |
| 4964826 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.81 | 73.0 | 5.15e-01 | 100.0% | 93.8% |
| 4963640 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.78 | 70.0 | 4.84e-01 | 100.0% | 86.7% |
| 4974419 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.75 | 67.0 | 4.55e-01 | 100.0% | 86.8% |
| 4317543 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.66 | 45.0 | 3.44e-01 | 70.4% | 93.9% |
| 5058736 | 140.1.1.15 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g | 0.54 | 42.0 | 3.03e-01 | 84.5% | 79.1% |
| 3744736 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.51 | 36.0 | 2.14e-01 | 73.2% | 19.1% |
D2
high
residues 25-164
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ornA01 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.83 | 63.0 | 6.95e-01 | 97.9% | 97.3% |
| 4uobA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.79 | 67.0 | 7.09e-01 | 95.0% | 99.2% |
| 1keaA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.78 | 61.0 | 6.71e-01 | 98.6% | 100.0% |
| 2h56A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.78 | 61.0 | 6.69e-01 | 95.0% | 100.0% |
| 1pu6A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.76 | 62.0 | 6.58e-01 | 97.9% | 97.6% |
| 3f0zA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.74 | 61.0 | 6.51e-01 | 90.7% | 100.0% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.59 | 34.0 | 3.76e-01 | 81.4% | 70.0% |
| 3e1sA01 | 1.10.10.2220 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 34.0 | 4.04e-01 | 98.6% | 96.8% |
| 4tkrA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.51 | 43.0 | 3.97e-01 | 92.9% | 94.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3955706 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.90 | 85.0 | 7.58e-01 | 100.0% | 74.6% |
| 5062011 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.82 | 64.0 | 6.74e-01 | 98.6% | 90.4% |
| 3285594 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.80 | 74.0 | 6.34e-01 | 100.0% | 64.5% |
| 4985582 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.79 | 74.0 | 5.59e-01 | 100.0% | 51.6% |
| 5078036 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.78 | 72.0 | 5.51e-01 | 98.6% | 58.4% |
| 4632903 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.78 | 73.0 | 5.44e-01 | 100.0% | 53.9% |
| 4029571 | 102.1.2.8 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD | 0.78 | 66.0 | 5.41e-01 | 100.0% | 52.3% |
| 5061207 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.78 | 72.0 | 5.56e-01 | 100.0% | 57.7% |
| 5062638 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.78 | 72.0 | 5.51e-01 | 100.0% | 58.7% |
| 3937588 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.77 | 72.0 | 5.36e-01 | 100.0% | 53.3% |
| 3896239 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.77 | 71.0 | 5.40e-01 | 100.0% | 55.3% |
| 4990588 | 102.1.2.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › AGOG | 0.76 | 71.0 | 5.54e-01 | 100.0% | 54.7% |
| 3515866 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.76 | 70.0 | 5.52e-01 | 98.6% | 56.8% |
| 3350474 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.75 | 62.0 | 6.15e-01 | 96.4% | 82.4% |
| 5033046 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.74 | 62.0 | 5.28e-01 | 100.0% | 56.7% |
| 4963672 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.71 | 66.0 | 5.34e-01 | 100.0% | 65.0% |
| 3029 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.68 | 62.0 | 5.34e-01 | 97.9% | 83.4% |
| 4476435 | 102.1.2.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › AGOG | 0.63 | 56.0 | 4.54e-01 | 100.0% | 53.9% |
| 3656530 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.60 | 31.0 | 4.01e-01 | 77.9% | 90.7% |
| 3738702 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.57 | 46.0 | 4.86e-01 | 88.6% | 95.2% |
| 3794865 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 33.0 | 2.48e-01 | 88.6% | 23.4% |