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S16_GE16_scaffold_10741_prodigal-single.1__X__X__00392

Bact-Vir

S16_GE16_scaffold_10741_prodigal-single.1__X__X__00392

Identity

Kingdom:
phage

Quality

87.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kd0A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.75 64.0 5.81e-01 100.0% 98.6%
2l7rA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.74 64.0 5.66e-01 100.0% 91.9%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 60.0 5.04e-01 100.0% 93.8%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.73 62.0 5.43e-01 100.0% 97.5%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.72 62.0 5.32e-01 100.0% 97.6%
3w1sC00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 60.0 5.36e-01 100.0% 93.4%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 59.0 5.22e-01 100.0% 98.8%
2fnjB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.70 58.0 4.84e-01 100.0% 78.6%
1n8yC02 2.10.220.10 Mainly Beta › Ribbon › Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A domain 2 › Hormone Receptor, Insulin-like Growth Factor Receptor 1; Chain A, domain 2 0.70 45.0 3.41e-01 100.0% 27.7%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 57.0 5.06e-01 100.0% 98.7%
7sbiA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.69 57.0 5.25e-01 100.0% 100.0%
1vjkA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.69 57.0 4.92e-01 100.0% 95.4%
6djwA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.68 56.0 5.11e-01 100.0% 98.6%
2mlbA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 55.0 4.91e-01 100.0% 88.6%
3m62B00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 55.0 5.04e-01 100.0% 97.2%
1zxhA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 53.0 5.24e-01 100.0% 98.2%
2pw9C02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 53.0 5.16e-01 100.0% 98.3%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.65 54.0 4.52e-01 100.0% 96.9%
5cxdB01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.65 44.0 3.36e-01 70.0% 36.7%
1v5tA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 52.0 4.52e-01 100.0% 82.2%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.65 55.0 4.46e-01 100.0% 94.0%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.11e-01 82.0% 78.0%
2c43A01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.64 45.0 3.32e-01 76.0% 55.2%
1wiaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 53.0 4.88e-01 100.0% 98.6%
2m1mA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 53.0 4.30e-01 100.0% 82.2%
2e1qC01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.64 51.0 4.42e-01 100.0% 90.2%
2mqjA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 51.0 4.62e-01 100.0% 94.8%
3e59B02 3.30.60.140 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 45.0 4.87e-01 98.0% 100.0%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.63 51.0 4.80e-01 100.0% 100.0%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 3.98e-01 84.0% 76.2%
2r01A02 2.20.180.10 Mainly Beta › Single Sheet › putative fmn-dependent nitroreductase like fold › putative fmn-dependent nitroreductase like domains 0.60 33.0 3.60e-01 96.0% 64.3%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.93e-01 82.0% 73.6%
1jroA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.59 46.0 4.22e-01 100.0% 95.0%
3f2iF00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.59 43.0 3.10e-01 84.0% 64.5%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.58 46.0 3.17e-01 100.0% 85.2%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 46.0 4.06e-01 98.0% 91.6%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.57 40.0 2.53e-01 76.0% 50.6%
4ol9A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 49.0 3.38e-01 100.0% 59.4%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.56 42.0 3.17e-01 98.0% 97.7%
2bw2A01 3.10.20.420 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain 0.54 44.0 4.38e-01 100.0% 94.5%
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.54 40.0 3.02e-01 92.0% 37.2%
1fcdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 2.89e-01 78.0% 94.2%
1n6zA00 3.10.20.250 Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like 0.54 43.0 3.61e-01 100.0% 78.1%
4nrvA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 41.0 3.12e-01 90.0% 56.6%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 46.0 2.73e-01 100.0% 28.5%
7zs9F01 3.90.940.10 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega 0.52 31.0 2.55e-01 96.0% 29.0%
1oj4A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 43.0 3.08e-01 96.0% 90.2%
1earA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.52 35.0 3.24e-01 74.0% 95.9%
1wruA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.52 45.0 3.77e-01 100.0% 62.5%
2i4lA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 42.0 2.64e-01 100.0% 24.1%
3d37A02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.51 38.0 3.36e-01 88.0% 83.5%
4eogA01 3.40.50.10640 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like 0.51 39.0 2.48e-01 88.0% 60.4%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 35.0 2.56e-01 76.0% 23.5%
3ea0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 36.0 2.43e-01 82.0% 70.4%
4jtmA00 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.50 43.0 3.71e-01 100.0% 66.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3420159 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.75 64.0 5.70e-01 100.0% 94.7%
3879537 221.1.1.94 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AIP3 0.74 64.0 5.56e-01 100.0% 97.5%
5025556 221.1.1.14 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ThiS 0.74 64.0 5.66e-01 100.0% 98.7%
3609495 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 64.0 5.49e-01 100.0% 93.8%
3242889 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 64.0 5.39e-01 100.0% 94.1%
3617704 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 62.0 6.10e-01 98.0% 96.4%
3220041 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.73 62.0 4.99e-01 98.0% 79.0%
4144355 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.72 62.0 5.49e-01 100.0% 96.0%
3938251 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 58.0 4.74e-01 100.0% 79.0%
3410178 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 58.0 4.81e-01 100.0% 96.0%
3754085 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.70 61.0 4.84e-01 100.0% 74.0%
3306863 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.70 57.0 4.84e-01 100.0% 75.8%
3484798 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 59.0 5.06e-01 100.0% 87.1%
3997436 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.70 58.0 4.58e-01 100.0% 70.4%
3781277 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 56.0 4.78e-01 100.0% 90.4%
3355184 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.69 57.0 5.03e-01 100.0% 88.7%
3415275 221.1.1.70 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › OTU1_UBXL 0.69 59.0 5.13e-01 100.0% 96.2%
3622068 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.69 59.0 4.92e-01 100.0% 85.6%
4249669 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 56.0 4.71e-01 100.0% 100.0%
3889364 221.1.1.164 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF29299 0.68 56.0 4.94e-01 100.0% 96.2%
3778745 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.68 56.0 4.77e-01 100.0% 78.9%
3828381 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.67 53.0 4.66e-01 92.0% 77.5%
4045481 221.1.1.48 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_4 0.67 57.0 4.56e-01 100.0% 90.5%
4627512 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 56.0 5.34e-01 100.0% 95.0%
5030607 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 54.0 4.94e-01 100.0% 100.0%
3304908 221.1.1.157 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_GT-1 0.64 52.0 4.86e-01 100.0% 90.0%
5077501 3715.1.1.0 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.64 54.0 4.63e-01 98.0% 98.8%
4953290 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 51.0 5.19e-01 94.0% 100.0%
3965820 221.1.1.1 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 0.63 52.0 4.55e-01 100.0% 95.3%
2106287 3715.1.1.1 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.63 51.0 4.33e-01 100.0% 96.9%
5034767 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.63 50.0 4.24e-01 96.0% 98.9%
4970952 3715.1.1.1 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.63 50.0 4.39e-01 96.0% 96.5%
4467041 221.1.1.48 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2_4 0.62 52.0 4.49e-01 100.0% 87.1%
3710687 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 45.0 3.98e-01 90.0% 53.3%
4205863 221.1.1.16 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TGS 0.61 50.0 4.81e-01 100.0% 93.3%
5031343 3715.1.1.0 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e 0.61 48.0 4.24e-01 100.0% 96.7%
4956606 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.60 41.0 2.84e-01 74.0% 22.6%
5027955 4961.1.1.1 a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.60 51.0 4.97e-01 100.0% 94.5%
3716890 221.3.1.0 a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.59 52.0 4.79e-01 100.0% 83.1%
3702688 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.59 52.0 4.84e-01 100.0% 85.7%
2834167 304.37.1.1 a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr 0.57 46.0 3.91e-01 88.0% 64.6%
4276676 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.55 40.0 3.68e-01 84.0% 78.7%
4380266 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 40.0 2.80e-01 90.0% 60.0%
4932691 4961.1.1.0 a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit 0.55 47.0 4.02e-01 100.0% 60.0%
4001929 246.3.1.3 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos_2 0.55 46.0 3.03e-01 98.0% 97.8%
4565474 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.54 45.0 3.24e-01 100.0% 56.9%
3972187 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.54 48.0 4.00e-01 100.0% 61.2%
3236950 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.52 42.0 3.91e-01 100.0% 88.6%
3170738 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 37.0 3.82e-01 100.0% 93.3%
3969396 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 36.0 2.35e-01 76.0% 75.8%
3785105 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.11e-01 96.0% 42.1%
185933 3070.1.1.12 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd 0.52 45.0 3.77e-01 100.0% 62.5%
1070142 3070.1.1.11 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › type_II_gspD_N0 0.51 44.0 3.82e-01 100.0% 66.7%
184487 3070.1.1.12 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd 0.51 38.0 3.36e-01 88.0% 83.5%
3967742 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.51 38.0 3.24e-01 80.0% 81.0%