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S16_GE16_scaffold_5545_prodigal-single.1__X__X__00061

Bact-Vir

S16_GE16_scaffold_5545_prodigal-single.1__X__X__00061

Identity

Kingdom:
phage

Quality

74.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.87 48.0 4.56e-01 73.3% 48.6%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 64.0 5.17e-01 98.3% 50.5%
1xocA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.73 46.0 3.08e-01 80.0% 17.4%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.70 59.0 3.76e-01 100.0% 20.0%
5o5jT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.69 62.0 5.51e-01 100.0% 71.8%
4fx5A03 1.20.120.1690 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 59.0 4.96e-01 100.0% 64.0%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.66 57.0 4.76e-01 100.0% 87.2%
3c4wB01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.65 55.0 3.78e-01 91.7% 28.9%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.65 57.0 4.46e-01 98.3% 47.1%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.65 56.0 5.16e-01 98.3% 93.6%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.64 44.0 3.88e-01 75.0% 47.8%
3nzpB03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 56.0 5.14e-01 100.0% 81.0%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.64 55.0 4.81e-01 100.0% 86.0%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 45.0 4.22e-01 76.7% 60.5%
2acxA01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.63 55.0 3.79e-01 98.3% 28.8%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 54.0 3.69e-01 100.0% 44.0%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.62 53.0 5.05e-01 100.0% 91.9%
3nynA03 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.62 55.0 4.94e-01 98.3% 72.8%
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 3.56e-01 73.3% 52.5%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 51.0 4.62e-01 98.3% 88.1%
8gr7A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 50.0 3.23e-01 100.0% 30.5%
2a72A00 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.59 52.0 4.02e-01 100.0% 45.1%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.58 42.0 3.89e-01 78.3% 67.1%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.31e-01 76.7% 80.6%
3f0zA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.57 39.0 3.13e-01 100.0% 35.5%
1mhyG01 1.20.1280.10 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 0.57 47.0 4.61e-01 100.0% 86.8%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.56 39.0 3.19e-01 73.3% 39.1%
3cuxA02 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.55 47.0 3.84e-01 100.0% 96.7%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.03e-01 76.7% 70.5%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.55 41.0 3.36e-01 81.7% 84.3%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 45.0 4.20e-01 100.0% 75.0%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.53 42.0 3.73e-01 88.3% 91.2%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.52 41.0 4.25e-01 93.3% 91.2%
3ui3A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.37e-01 81.7% 59.2%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.86e-01 100.0% 98.9%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 42.0 2.84e-01 93.3% 73.8%
2a5yC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.56e-01 100.0% 80.2%
2y3mA02 3.30.1370.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 35.0 3.66e-01 73.3% 78.6%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.50 41.0 3.24e-01 100.0% 39.9%
1dvoA00 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.50 42.0 3.17e-01 95.0% 57.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3684212 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 52.0 3.80e-01 100.0% 28.4%
3592663 604.22.1.0 ↗ alpha bundles › Spectrin repeat-like › tubulin binding cofactor C N-terminal domain › tubulin binding cofactor C N-terminal domain 0.74 67.0 5.57e-01 100.0% 64.0%
4009765 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 64.0 3.97e-01 98.3% 21.0%
3385709 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.70 63.0 5.58e-01 100.0% 71.8%
4022379 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.69 49.0 3.70e-01 76.7% 32.0%
3481299 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.68 57.0 5.62e-01 98.3% 89.2%
3943718 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 57.0 4.17e-01 95.0% 37.5%
3179505 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.67 56.0 4.27e-01 100.0% 68.4%
151381 604.16.1.2 ↗ alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › VWA_3_C 0.67 45.0 4.68e-01 70.0% 81.1%
1108085 109.4.1.58 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1 0.66 56.0 3.31e-01 100.0% 11.6%
3391391 4177.1.1.16 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAP206 0.66 47.0 3.01e-01 78.3% 14.8%
3324543 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.65 56.0 3.68e-01 100.0% 45.5%
4503571 223.1.1.83 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_13 0.65 45.0 3.03e-01 73.3% 23.3%
3700475 320.4.1.0 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain 0.65 55.0 4.56e-01 93.3% 100.0%
4955480 6155.1.1.8 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › Pyr4-TMTC 0.64 57.0 4.25e-01 100.0% 50.7%
3480233 109.4.1.957 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TTI1_N 0.63 54.0 3.35e-01 100.0% 37.4%
4477679 604.27.1.1 ↗ alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac › Endotoxin_C2 0.63 52.0 4.50e-01 100.0% 70.5%
3399010 5059.1.1.5 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA 0.63 54.0 3.43e-01 100.0% 69.4%
3176105 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.63 46.0 2.99e-01 81.7% 16.6%
3169779 109.3.1.175 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › LHD_TRPY1 0.62 53.0 3.68e-01 96.7% 47.8%
2749857 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.62 42.0 2.79e-01 100.0% 15.1%
3678611 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.62 45.0 4.13e-01 78.3% 73.8%
3598062 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 4.05e-01 100.0% 46.0%
3174253 109.4.1.481 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1,CNOT1_TTP_bind,CNOT1_HEAT,CNOT1_HEAT_N 0.61 54.0 2.97e-01 100.0% 11.6%
3188995 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 52.0 4.13e-01 100.0% 76.9%
3976270 601.27.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF3053 0.61 52.0 3.88e-01 100.0% 58.8%
4269888 109.4.1.269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3 0.61 52.0 3.43e-01 100.0% 83.0%
3520894 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 53.0 3.08e-01 100.0% 16.4%
4449671 5059.1.1.6 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › CSG2 0.60 43.0 2.68e-01 76.7% 59.7%
4022449 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 3.59e-01 93.3% 73.5%
3619566 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.60 52.0 3.24e-01 100.0% 84.4%
4927945 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.60 47.0 2.84e-01 88.3% 13.7%
3497712 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 47.0 3.22e-01 88.3% 26.7%
3471523 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.59 49.0 3.31e-01 100.0% 37.8%
4490179 109.4.1.1289 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856 0.59 50.0 3.12e-01 100.0% 33.1%
3427551 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.88e-01 95.0% 89.1%
5080454 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.56 39.0 2.88e-01 75.0% 41.7%
4190838 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.56 48.0 4.07e-01 96.7% 76.0%
4970541 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.80e-01 93.3% 78.0%
3611653 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.77e-01 95.0% 94.8%
3492170 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 44.0 2.93e-01 100.0% 21.2%
3175295 109.4.1.334 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MNE1 0.54 46.0 3.03e-01 100.0% 89.9%
4028213 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.57e-01 100.0% 75.6%
4265930 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.54 39.0 3.93e-01 76.7% 96.7%
3592333 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 4.17e-01 96.7% 80.0%
5011321 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 35.0 3.02e-01 95.0% 39.0%
3835199 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.54 37.0 3.60e-01 75.0% 71.4%
3272721 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 3.63e-01 98.3% 84.0%
3744638 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 36.0 3.32e-01 71.7% 55.0%
3701805 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.52 39.0 4.10e-01 95.0% 98.0%
3628118 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.52 43.0 2.67e-01 96.7% 59.7%
4993453 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 35.0 3.68e-01 81.7% 78.2%
5060820 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 39.0 2.45e-01 91.7% 13.5%
4877984 141.1.1.8 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 0.51 42.0 3.24e-01 95.0% 72.8%
3607702 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.51 40.0 4.13e-01 100.0% 94.5%
3267186 4203.1.1.1 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 0.51 40.0 3.63e-01 95.0% 62.4%
4821450 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.50 41.0 4.14e-01 95.0% 94.9%
4971000 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.50 38.0 3.37e-01 93.3% 53.0%
3479867 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.50 43.0 2.89e-01 100.0% 82.1%
5066233 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.50 42.0 2.81e-01 98.3% 38.9%