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S16_GE16_scaffold_5545_prodigal-single.1__X__X__00074

Bact-Vir

S16_GE16_scaffold_5545_prodigal-single.1__X__X__00074

Identity

Kingdom:
phage

Quality

72.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-89
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wzoA01 3.30.160.360 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 55.0 4.51e-01 79.2% 65.4%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.70 55.0 4.93e-01 86.1% 96.1%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.68 50.0 3.93e-01 77.8% 98.7%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.68 50.0 4.63e-01 77.8% 75.6%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.66 57.0 4.85e-01 95.8% 89.0%
3sb1A01 3.30.1370.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain 0.66 43.0 3.91e-01 98.6% 49.5%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 44.0 2.75e-01 70.8% 29.1%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.63 54.0 5.35e-01 95.8% 96.1%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.63 37.0 3.50e-01 86.1% 48.8%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.62 51.0 4.92e-01 88.9% 82.5%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 51.0 4.23e-01 93.1% 71.1%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.61 44.0 3.04e-01 81.9% 22.4%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 46.0 3.93e-01 84.7% 98.4%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.61 51.0 3.72e-01 93.1% 64.1%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.60 49.0 4.25e-01 93.1% 78.0%
1g0uE00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 51.0 3.57e-01 93.1% 55.2%
2jobA00 3.30.160.320 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 4.08e-01 83.3% 70.6%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 44.0 3.94e-01 81.9% 79.6%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 51.0 4.22e-01 98.6% 91.0%
6muwB00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 50.0 3.49e-01 93.1% 56.8%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 51.0 3.76e-01 98.6% 95.5%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 49.0 3.69e-01 93.1% 68.7%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 51.0 3.62e-01 95.8% 63.6%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.58 50.0 4.49e-01 100.0% 69.2%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 48.0 3.47e-01 93.1% 59.2%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.58 48.0 3.46e-01 93.1% 56.8%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 51.0 3.38e-01 100.0% 82.4%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 49.0 3.56e-01 95.8% 64.3%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 45.0 3.05e-01 90.3% 74.5%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.57 44.0 3.57e-01 87.5% 77.9%
3tg9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 49.0 3.25e-01 100.0% 83.5%
6qm7J00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 46.0 3.39e-01 93.1% 62.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 51.0 4.05e-01 100.0% 64.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 34.0 3.98e-01 81.9% 95.7%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 43.0 4.35e-01 88.9% 98.6%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 4.24e-01 94.4% 92.4%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.94e-01 93.1% 90.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.52 48.0 3.02e-01 100.0% 20.1%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 41.0 3.26e-01 86.1% 49.0%
1tluA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.52 42.0 3.71e-01 95.8% 75.2%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.51 42.0 2.74e-01 97.2% 31.5%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.97e-01 91.7% 85.9%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 2.64e-01 79.2% 58.1%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.77e-01 95.8% 36.7%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.41e-01 98.6% 66.3%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3999814 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.78 58.0 4.30e-01 79.2% 49.1%
5035481 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.75 44.0 3.56e-01 93.1% 31.1%
4946106 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 54.0 3.47e-01 76.4% 38.9%
3340222 3131.1.1.3 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRC 0.74 53.0 4.39e-01 75.0% 80.8%
5011313 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.72 41.0 3.26e-01 97.2% 28.3%
5074996 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.71 52.0 3.93e-01 77.8% 87.6%
863 9.4.1.1 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.70 55.0 4.91e-01 86.1% 95.1%
3964101 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.69 39.0 4.28e-01 83.3% 68.3%
1063623 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 54.0 4.34e-01 84.7% 96.4%
3704328 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.68 46.0 4.43e-01 70.8% 79.5%
1567525 3842.1.1.1 ↗ a+b two layers › Uncharacterized protein Rv3902c › Uncharacterized protein Rv3902c › Uncharacterized protein Rv3902c › Imm61 0.66 56.0 4.33e-01 98.6% 54.9%
3916950 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.66 57.0 3.83e-01 95.8% 72.5%
4032017 2004.1.1.301 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.66 47.0 2.77e-01 76.4% 19.2%
1170462 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.65 39.0 4.23e-01 86.1% 70.5%
4927782 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.65 39.0 4.26e-01 87.5% 73.3%
4936791 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.64 47.0 2.88e-01 77.8% 26.3%
4988831 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 39.0 4.34e-01 95.8% 81.8%
1148074 3400.1.1.1 ↗ a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.62 45.0 3.15e-01 76.4% 52.7%
4998349 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.61 52.0 3.70e-01 93.1% 61.1%
3573995 210.1.1.2 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N 0.61 51.0 3.69e-01 93.1% 62.3%
3546306 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 52.0 4.77e-01 100.0% 72.6%
4975657 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.60 50.0 3.49e-01 93.1% 53.6%
4999721 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.59 50.0 3.45e-01 93.1% 52.0%
4464657 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 42.0 4.06e-01 81.9% 66.3%
5051444 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.59 46.0 3.65e-01 86.1% 83.9%
4027378 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.58 49.0 3.36e-01 93.1% 49.4%
3191231 210.1.1.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Pr_beta_C 0.58 49.0 3.45e-01 93.1% 54.6%
4945506 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.58 50.0 3.58e-01 95.8% 63.8%
4948083 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.58 48.0 3.51e-01 93.1% 61.5%
4979383 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.57 48.0 3.48e-01 93.1% 61.5%
4167904 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.57 48.0 3.49e-01 93.1% 61.5%
3290558 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 44.0 3.42e-01 83.3% 92.9%
3536576 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.57 49.0 4.70e-01 100.0% 81.2%
3703666 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.57 44.0 3.31e-01 83.3% 59.4%
3543547 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.56 48.0 3.44e-01 95.8% 61.7%
3609492 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 47.0 3.82e-01 94.4% 60.0%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 43.0 4.33e-01 87.5% 89.3%
5041229 375.13.1.0 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.55 42.0 4.47e-01 100.0% 98.3%
3955906 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 42.0 4.06e-01 87.5% 85.9%
4649416 330.6.1.0 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.55 42.0 4.11e-01 88.9% 96.5%
1140900 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.54 40.0 4.31e-01 91.7% 100.0%
3965259 243.3.1.16 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 0.53 44.0 4.45e-01 93.1% 90.5%
3803814 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.53 45.0 3.48e-01 97.2% 87.4%
4994580 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 47.0 2.84e-01 100.0% 92.4%
4033432 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.52 39.0 4.17e-01 83.3% 96.7%
4026604 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.51 47.0 4.07e-01 100.0% 70.0%
4991900 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 45.0 2.87e-01 100.0% 23.1%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.51 40.0 3.86e-01 97.2% 76.2%
5049640 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 37.0 3.58e-01 76.4% 83.5%
4243492 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.50 36.0 3.89e-01 81.9% 91.7%
3369217 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.50 45.0 3.85e-01 100.0% 71.3%