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S16_GE16_scaffold_5545_prodigal-single.1__X__X__00117
Bact-VirS16_GE16_scaffold_5545_prodigal-single.1__X__X__00117
Identity
- Kingdom:
- phage
Quality
59.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-147
D2
medium
residues 179-322
Domain cluster:
rep: gwa1_scaffold_31_prodigal-single.1__X__X__00282__D199-347
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.56 | 40.0 | 4.48e-01 | 76.4% | 95.5% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 33.0 | 3.95e-01 | 70.8% | 90.7% |
| 3qatA01 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.52 | 42.0 | 3.57e-01 | 87.5% | 73.4% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 37.0 | 4.12e-01 | 81.9% | 95.5% |
| 3nqxA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.51 | 35.0 | 3.52e-01 | 81.2% | 69.2% |
| 1jfaB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 41.0 | 3.12e-01 | 87.5% | 52.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981280 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.75 | 65.0 | 6.52e-01 | 94.4% | 91.0% |
| 4032310 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.73 | 56.0 | 5.58e-01 | 79.9% | 77.3% |
| 3941716 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.73 | 62.0 | 6.49e-01 | 91.0% | 100.0% |
| 3980709 | 103.4.1.27 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TMP_2 | 0.66 | 54.0 | 5.21e-01 | 86.8% | 97.5% |
| 4571333 | 5073.1.1.4 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C,Cation_ATPase_N | 0.63 | 52.0 | 3.61e-01 | 89.6% | 72.2% |
| None | — | 0.61 | 51.0 | 4.79e-01 | 91.0% | 88.0% | |
| 5064744 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.60 | 47.0 | 4.51e-01 | 83.3% | 85.9% |
| 4996002 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.59 | 49.0 | 4.61e-01 | 88.2% | 85.1% |
| 5068704 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.59 | 49.0 | 4.76e-01 | 90.3% | 88.5% |
| 4958846 | 5073.1.1.11 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C | 0.58 | 48.0 | 3.61e-01 | 88.2% | 95.8% |
| 3322329 | 3238.1.1.0 ↗ | alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF | 0.56 | 50.0 | 4.33e-01 | 97.9% | 92.9% |
| 4943989 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 41.0 | 4.02e-01 | 79.2% | 100.0% |
| 4949996 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.52 | 44.0 | 3.62e-01 | 91.7% | 96.2% |
| 5051431 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.51 | 41.0 | 3.18e-01 | 87.5% | 100.0% |
D3
medium
residues 323-447
Domain cluster:
rep: IMGVR_UViG_2529292698_000003-2529292698-2529621151__D464-562
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wusS00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.57 | 37.0 | 4.36e-01 | 84.8% | 100.0% |
| 1keaA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.56 | 36.0 | 3.83e-01 | 97.6% | 72.6% |
| 1ornA01 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.55 | 36.0 | 3.76e-01 | 100.0% | 72.3% |
| 5gl7A01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.55 | 38.0 | 3.48e-01 | 70.4% | 63.9% |
| 3ousA00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 33.0 | 3.97e-01 | 83.2% | 91.5% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 42.0 | 3.98e-01 | 82.4% | 96.8% |
| 1f5oA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 40.0 | 3.83e-01 | 80.0% | 94.6% |
| 1aorA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.53 | 41.0 | 3.64e-01 | 84.0% | 81.7% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 39.0 | 3.73e-01 | 79.2% | 97.9% |
| 2pmiB00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 43.0 | 3.68e-01 | 96.0% | 61.0% |
| 1x04A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.50 | 36.0 | 3.07e-01 | 73.6% | 86.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3752531 | 592.1.1.7 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 | 0.58 | 35.0 | 3.94e-01 | 84.8% | 78.9% |
| 4990613 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.58 | 40.0 | 3.03e-01 | 91.2% | 28.2% |
| 5020412 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.57 | 41.0 | 4.44e-01 | 87.2% | 88.6% |
| 3713234 | 3187.1.1.0 ↗ | alpha bundles › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein › Microtubule-Binding Domain of Flagellar Dynein | 0.56 | 44.0 | 3.94e-01 | 84.8% | 73.0% |
| 3302992 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.52 | 44.0 | 3.92e-01 | 94.4% | 65.9% |
| 3185821 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.52 | 32.0 | 3.85e-01 | 75.2% | 100.0% |
| 3871945 | 1147.1.1.6 ↗ | alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › MARVEL | 0.51 | 41.0 | 3.93e-01 | 88.0% | 77.3% |
| 5066144 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.51 | 29.0 | 3.08e-01 | 72.8% | 58.3% |
| 4046137 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.50 | 41.0 | 3.81e-01 | 89.6% | 87.8% |